View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13182_low_13 (Length: 286)

Name: NF13182_low_13
Description: NF13182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13182_low_13
NF13182_low_13
[»] chr7 (4 HSPs)
chr7 (97-278)||(36943313-36943495)
chr7 (112-149)||(34235587-34235624)
chr7 (111-147)||(17749724-17749760)
chr7 (111-147)||(24539237-24539273)
[»] chr8 (3 HSPs)
chr8 (108-149)||(6387588-6387629)
chr8 (103-134)||(32587535-32587566)
chr8 (111-150)||(39455658-39455697)
[»] chr1 (3 HSPs)
chr1 (111-147)||(13114784-13114820)
chr1 (111-147)||(50424980-50425016)
chr1 (111-147)||(50773225-50773261)
[»] scaffold0095 (1 HSPs)
scaffold0095 (111-150)||(14043-14082)
[»] chr4 (2 HSPs)
chr4 (107-150)||(40662036-40662079)
chr4 (111-149)||(20454570-20454608)
[»] chr5 (1 HSPs)
chr5 (112-150)||(16875376-16875414)
[»] chr3 (7 HSPs)
chr3 (101-151)||(33164940-33164990)
chr3 (107-149)||(37926557-37926599)
chr3 (111-149)||(41707551-41707589)
chr3 (111-148)||(27243075-27243112)
chr3 (111-148)||(50661635-50661672)
chr3 (103-131)||(41170803-41170831)
chr3 (105-149)||(46450089-46450133)


Alignment Details
Target: chr7 (Bit Score: 121; Significance: 5e-62; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 97 - 278
Target Start/End: Complemental strand, 36943495 - 36943313
Alignment:
Q  97 gagatatatgaacactctctaacactcactctcttattagataaaatcaatgtgaaagaatgaatgttagagaaactgttaa-aaaatatgtacatgatt 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  36943495 gagatatatgaacactctctaacactcactctcttattagataaaatcaatgtgaaagaatgaatgttagagaaactgttaaaaaaatatgtacatgatt 36943396  T
Q  196 ctcattnnnnnnnnnnnnnnnnnntttaagataagatcgtctttgttttccaactttactttaaagtatttatgctctctgct 278  Q
    ||||||                  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36943395 ctcattaaaaaaataaataaaaaatttaagataagatcgtctttgttttccaactttactttaaagtatttatgctctctgct 36943313  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 34235587 - 34235624
Alignment:
Q  112 tctctaacactcactctcttattagataaaatcaatgt 149  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  34235587 tctctaacactcactttcttattagataaaatcaatgt 34235624  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 147
Target Start/End: Original strand, 17749724 - 17749760
Alignment:
Q  111 ctctctaacactcactctcttattagataaaatcaat 147  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  17749724 ctctctaacactcactcttttattggataaaatcaat 17749760  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 147
Target Start/End: Complemental strand, 24539273 - 24539237
Alignment:
Q  111 ctctctaacactcactctcttattagataaaatcaat 147  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  24539273 ctctctaacactcactcttttattggataaaatcaat 24539237  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 149
Target Start/End: Original strand, 6387588 - 6387629
Alignment:
Q  108 acactctctaacactcactctcttattagataaaatcaatgt 149  Q
    ||||||||||||||||||||| ||||| ||||||||||||||    
T  6387588 acactctctaacactcactcttttattggataaaatcaatgt 6387629  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 103 - 134
Target Start/End: Original strand, 32587535 - 32587566
Alignment:
Q  103 tatgaacactctctaacactcactctcttatt 134  Q
    ||||||||||||||||||||||||||||||||    
T  32587535 tatgaacactctctaacactcactctcttatt 32587566  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 150
Target Start/End: Complemental strand, 39455697 - 39455658
Alignment:
Q  111 ctctctaacactcactctcttattagataaaatcaatgtg 150  Q
    ||||||||||| |||||||||||||| |||||||||||||    
T  39455697 ctctctaacacccactctcttattaggtaaaatcaatgtg 39455658  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 147
Target Start/End: Complemental strand, 13114820 - 13114784
Alignment:
Q  111 ctctctaacactcactctcttattagataaaatcaat 147  Q
    |||||||||||||||||| ||||||||||||||||||    
T  13114820 ctctctaacactcactcttttattagataaaatcaat 13114784  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 147
Target Start/End: Complemental strand, 50425016 - 50424980
Alignment:
Q  111 ctctctaacactcactctcttattagataaaatcaat 147  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  50425016 ctctctaacactcactcttttattggataaaatcaat 50424980  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 147
Target Start/End: Complemental strand, 50773261 - 50773225
Alignment:
Q  111 ctctctaacactcactctcttattagataaaatcaat 147  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  50773261 ctctctaacactcactcttttattggataaaatcaat 50773225  T

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Target: scaffold0095 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 150
Target Start/End: Original strand, 14043 - 14082
Alignment:
Q  111 ctctctaacactcactctcttattagataaaatcaatgtg 150  Q
    ||||||||||| |||||||||||||| |||||||||||||    
T  14043 ctctctaacacccactctcttattaggtaaaatcaatgtg 14082  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 150
Target Start/End: Complemental strand, 40662079 - 40662036
Alignment:
Q  107 aacactctctaacactcactctcttattagataaaatcaatgtg 150  Q
    |||||||||||||| ||||||||||||| |||||||| ||||||    
T  40662079 aacactctctaacattcactctcttattggataaaattaatgtg 40662036  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 149
Target Start/End: Original strand, 20454570 - 20454608
Alignment:
Q  111 ctctctaacactcactctcttattagataaaatcaatgt 149  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  20454570 ctctctagcactcactcttttattagataaaatcaatgt 20454608  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 150
Target Start/End: Complemental strand, 16875414 - 16875376
Alignment:
Q  112 tctctaacactcactctcttattagataaaatcaatgtg 150  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  16875414 tctctaacactcactctcttattgggtaaaatcaatgtg 16875376  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 151
Target Start/End: Complemental strand, 33164990 - 33164940
Alignment:
Q  101 tatatgaacactctctaacactcactctcttattagataaaatcaatgtga 151  Q
    |||| |||| || ||||||||||||||||||||| ||| ||||||||||||    
T  33164990 tataggaactctttctaacactcactctcttattggattaaatcaatgtga 33164940  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 37926557 - 37926599
Alignment:
Q  107 aacactctctaacactcactctcttattagataaaatcaatgt 149  Q
    |||||||||||||||||||| ||||||||| | ||||||||||    
T  37926557 aacactctctaacactcactttcttattaggtgaaatcaatgt 37926599  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 149
Target Start/End: Complemental strand, 41707589 - 41707551
Alignment:
Q  111 ctctctaacactcactctcttattagataaaatcaatgt 149  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  41707589 ctctctaacactcactctctcattggataaaatcaatgt 41707551  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 148
Target Start/End: Original strand, 27243075 - 27243112
Alignment:
Q  111 ctctctaacactcactctcttattagataaaatcaatg 148  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  27243075 ctctctaacactcactcttttattggataaaatcaatg 27243112  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 148
Target Start/End: Complemental strand, 50661672 - 50661635
Alignment:
Q  111 ctctctaacactcactctcttattagataaaatcaatg 148  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  50661672 ctctctaacacttactcttttattagataaaatcaatg 50661635  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 131
Target Start/End: Complemental strand, 41170831 - 41170803
Alignment:
Q  103 tatgaacactctctaacactcactctctt 131  Q
    |||||||||||||||||||||||||||||    
T  41170831 tatgaacactctctaacactcactctctt 41170803  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 46450089 - 46450133
Alignment:
Q  105 tgaacactctctaacactcactctcttattagataaaatcaatgt 149  Q
    ||||||||||||| |||||||||| |||||||||  |||||||||    
T  46450089 tgaacactctctagcactcactcttttattagatggaatcaatgt 46450133  T

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