View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13182_low_16 (Length: 248)
Name: NF13182_low_16
Description: NF13182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13182_low_16 |
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| [»] chr3 (4 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-128; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 1608109 - 1608347
Alignment:
| Q |
10 |
atgaaaaattgtgttttcaaatagcttcaaacaatcaccatgaaccgttttatgcaccaatgagttttgttgttgttgagaattttcttgtgcttctttt |
109 |
Q |
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| T |
1608109 |
atgaaaaattgtgttttcaaatagcttcaaacaatcaccatgaaccgttttatgcacaaatgagttttgttgttgttgagaattttcttgtgcttctttt |
1608208 |
T |
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| Q |
110 |
tgcatggtaagagcttgttttaaggctaattgaacaagcatttccctgaattcaactctatgtttgattttgaaatgattgttcatttgtgttgtgtagt |
209 |
Q |
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| T |
1608209 |
tgcatggtaagagcttgttttaaggctaattgaacaagcatttccctgaattcaactctatgtttgattttgaaatgattgttcatttgtgttgtgtagt |
1608308 |
T |
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| Q |
210 |
gtttgcatggcttaggatgtggtgttaaattgcaccacc |
248 |
Q |
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| T |
1608309 |
gtttgcatggctttggatgtggtgttaaattgcaccacc |
1608347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 1631599 - 1631837
Alignment:
| Q |
10 |
atgaaaaattgtgttttcaaatagcttcaaacaatcaccatgaaccgttttatgcaccaatgagttttgttgttgttgagaattttcttgtgcttctttt |
109 |
Q |
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| T |
1631599 |
atgaaaaattgtgttttcaaatagcttcaaacaatcaccatgaaccgttttatgcaccaatgagttttgttgttgttgagaatttgcttgtgcttctttt |
1631698 |
T |
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| Q |
110 |
tgcatggtaagagcttgttttaaggctaattgaacaagcatttccctgaattcaactctatgtttgattttgaaatgattgttcatttgtgttgtgtagt |
209 |
Q |
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| T |
1631699 |
tgcatggtaagagcttgttttaaggctaattgaacaagcatttccctgaattcaactctatgtttgattttgaaatgattgttcatttgtgttgtgtagt |
1631798 |
T |
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| Q |
210 |
gtttgcatggcttaggatgtggtgttaaattgcaccacc |
248 |
Q |
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| T |
1631799 |
gtttgcatggctttggatgtggtgttaaattgcaccacc |
1631837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 1625116 - 1625354
Alignment:
| Q |
10 |
atgaaaaattgtgttttcaaatagcttcaaacaatcaccatgaaccgttttatgcaccaatgagttttgttgttgttgagaattttcttgtgcttctttt |
109 |
Q |
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| T |
1625116 |
atgaaaaattgtgttttcaactagcttcaaacaatcaccatgaaccgttttatgcaccgatgagttttgttgttgttgagaattgtcttgtgcttctttt |
1625215 |
T |
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| Q |
110 |
tgcatggtaagagcttgttttaaggctaattgaacaagcatttccctgaattcaactctatgtttgattttgaaatgattgttcatttgtgttgtgtagt |
209 |
Q |
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| T |
1625216 |
tgcatggtaagagcttgttttaaggctaattgaacaagcatttccctgaattcaactctatgtttgattttgaaatgattgttcatttgtgttgtgtagt |
1625315 |
T |
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| Q |
210 |
gtttgcatggcttaggatgtggtgttaaattgcaccacc |
248 |
Q |
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| T |
1625316 |
gtttgcatggcttaggatgtggtgttaaattgcaccacc |
1625354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 10818943 - 10818708
Alignment:
| Q |
10 |
atgaaaaattgtgttttcaaatagcttcaaacaatcaccatgaaccgttttatgcaccaatgagttttgttgttgttgagaattttcttgtgcttctttt |
109 |
Q |
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| T |
10818943 |
atgaaaaattgtattttcatatagcttcaaacaatcaccatgaaccgttttatgcaccgatgagttttgttgttg---agaattttcatgtgcttctttt |
10818847 |
T |
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| Q |
110 |
tgcatggtaagagcttgttttaaggctaattgaacaagcatttccctgaattcaactctatgtttgattttgaaatgattgttcatttgtgttgtgtagt |
209 |
Q |
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| T |
10818846 |
tgcatggtaagagcttggtttaaggctaattgaacaagcatttccctgaattcaattctatgtttgattttgaaatgattgttcatttgtgttgtgtagt |
10818747 |
T |
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| Q |
210 |
gtttgcatggcttaggatgtggtgttaaattgcaccacc |
248 |
Q |
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| T |
10818746 |
gtttgcatggcttaggatgtggtgttaaattgcaccacc |
10818708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 18786057 - 18786295
Alignment:
| Q |
10 |
atgaaaaattgtgttttcaaatagcttcaaacaatcaccatgaaccgttttatgcaccaatgagttttgttgttgttgagaattttcttgtgcttctttt |
109 |
Q |
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||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
18786057 |
atgaaaaattgtgttttcaaatagcttgaaacaatcagcatgaaccgttttatgcacggatgagttttgttgttgttgagaattatcttgtgcttctttt |
18786156 |
T |
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| Q |
110 |
tgcatggtaagagcttgttttaaggctaattgaacaagcatttccctgaattcaactctatgtttgattttgaaatgattgttcatttgtgttgtgtagt |
209 |
Q |
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| T |
18786157 |
tgcatggtaagagcttggtttaaggctaatttaacaagcatttccctgaattcaactctatgtttgattttgaagtgattgttcatttgtgttgtgtagt |
18786256 |
T |
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| Q |
210 |
gtttgcatggcttaggatgtggtgttaaattgcaccacc |
248 |
Q |
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| T |
18786257 |
gtttgcatggcttaggatgtggtgttaaattgcaccacc |
18786295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 10144721 - 10144758
Alignment:
| Q |
29 |
aatagcttcaaacaatcaccatgaaccgttttatgcac |
66 |
Q |
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| T |
10144721 |
aatagcttcaaacaatcacgatgaaccgtttcatgcac |
10144758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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