View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13182_low_7 (Length: 440)
Name: NF13182_low_7
Description: NF13182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13182_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 18 - 427
Target Start/End: Complemental strand, 10131941 - 10131532
Alignment:
| Q |
18 |
cattacaggtatgagtatgattgaaaattttactataagcccttaattaagtcatttatccaaacaaggccttaagatagttatgaactatgatcctgta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10131941 |
cattacaggtatgagtatgattgaaaattttactataagcccttaattaagtcatttatccaaacaaggccttaagatagttatgaactatgatcctgta |
10131842 |
T |
|
| Q |
118 |
aataaacaaaatgcaggcaattggacatcactgcaatcagttacagtctttgaatcttggatggtgcgaacaagtcagcgatgttggagtgatgagttta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10131841 |
aataaacaaaatgcaggcaattggacatcactgcaatcagttacagtctttgaatcttggatggtgcgaacaagtcagcgatgttggagtgatgagttta |
10131742 |
T |
|
| Q |
218 |
gcatatggatgtcctgatcttagaacacttgacttatgtggttgtgtccttataacaggtatttcattcgaaattgcagtactacatatgcattgacaat |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
10131741 |
gcatatggatgtcctgatcttagaacacttgacttatgtggttgtgtccttataacaggtatttcattcgaaattgcagcactacatatgcattgacaat |
10131642 |
T |
|
| Q |
318 |
tagttgtggtgttctaacttttgtgattctactaatgtgcaaatttcgtctccatgttgtacctcatttacttgagcttagtttagcatagatatgtatt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10131641 |
tagttgtggtgttctaacttttgtgattctactaatgtgcaagtttcgtctccatgttgtacctcatttacttgagcttagtttagcatagatatgtatt |
10131542 |
T |
|
| Q |
418 |
gtttcatctc |
427 |
Q |
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| T |
10131541 |
atttcatctc |
10131532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 131 - 281
Target Start/End: Original strand, 40694956 - 40695106
Alignment:
| Q |
131 |
caggcaattggacatcactgcaatcagttacagtctttgaatcttggatggtgcgaacaagtcagcgatgttggagtgatgagtttagcatatggatgtc |
230 |
Q |
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||||| |||||||| ||||||||||||| ||||||||||| ||||||||||| || |||| | |||||||||||||||||| |||||||||| |||| |
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| T |
40694956 |
caggctattggacactactgcaatcagttgcagtctttgaaccttggatggtgtgacaaagttggtgatgttggagtgatgagtctagcatatggttgtc |
40695055 |
T |
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| Q |
231 |
ctgatcttagaacacttgacttatgtggttgtgtccttataacaggtattt |
281 |
Q |
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||||||| || ||| |||| || ||||| |||||| |||||||||||||| |
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| T |
40695056 |
ctgatctaaggacagttgatttgtgtggctgtgtctatataacaggtattt |
40695106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 9380049 - 9380012
Alignment:
| Q |
48 |
tactataagcccttaattaagtcatttatccaaacaag |
85 |
Q |
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|||||||||| ||||||||||| ||||||||||||||| |
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| T |
9380049 |
tactataagcgcttaattaagttatttatccaaacaag |
9380012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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