View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13182_low_8 (Length: 433)
Name: NF13182_low_8
Description: NF13182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13182_low_8 |
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| [»] chr4 (4 HSPs) |
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| [»] scaffold0013 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 172 - 433
Target Start/End: Complemental strand, 162036 - 161776
Alignment:
| Q |
172 |
aaacaattatatttgcatgcatcatgttcaaaataggtaaataaatgtgtgttgaaatagactagaatgataacacctacctggtgacagtaaatgtaac |
271 |
Q |
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| T |
162036 |
aaacaaatatatatgcatgcatcatgttcaaaataggtaaataaatgtgtgttgaaatagactagaatgataacacctacctggtgacagtaaatgtaac |
161937 |
T |
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| Q |
272 |
gaagaatctctttgcgatgctcttgtgggaatacagaatcaaggtgtcctgtaatgtatacacagaatacctacaagtaggaaattaatgtagacataaa |
371 |
Q |
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| T |
161936 |
gaagaatctctttgcgatgctcttgtgggaatacagaatcaaggtgtcctgtaatgtatacacagaaaacctacaagtaggaaattaatgtagacataaa |
161837 |
T |
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| Q |
372 |
actcagtttaggcatactgtttacatagactaggtaaactcattaaaactctgtttacatct |
433 |
Q |
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| T |
161836 |
actcagtttaggcatactgtttacatagactaggtaaactcatt-aaactatgtttacatct |
161776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 19 - 174
Target Start/End: Complemental strand, 162275 - 162120
Alignment:
| Q |
19 |
cacgaatccagtttctggctctagcacaagcattgtcttgacctccatcaggtccttcaccaagaatccgcatacatatatagttgagtgcagtacaaaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
162275 |
cacgaatccagtttctggctctagcacaagcattgtcttgacctccatcaggtccttctccaagaatccgcatacatatatagttgagtgcagtacaaaa |
162176 |
T |
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| Q |
119 |
catggtactgtgaccctcaatttgtagcccccatccaccatcttcattcttcaaaa |
174 |
Q |
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| T |
162175 |
catggtactgtgaccctcaatttgtagcccccatccaccatcttcattcttcaaaa |
162120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 21 - 174
Target Start/End: Complemental strand, 103093 - 102940
Alignment:
| Q |
21 |
cgaatccagtttctggctctagcacaagcattgtcttgacctccatcaggtccttcaccaagaatccgcatacatatatagttgagtgcagtacaaaaca |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| ||||||||||||||||| |||||||||||||||| |
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| T |
103093 |
cgaatccagtttctggctctagcacaagcattgtcttgaccgccatcaggtccttctccgagaattcgcatacatatatagttaagtgcagtacaaaaca |
102994 |
T |
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| Q |
121 |
tggtactgtgaccctcaatttgtagcccccatccaccatcttcattcttcaaaa |
174 |
Q |
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|||| |||||||||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
102993 |
tggtgctgtgaccctcaatgtgtagcccccatcctccatcttcattcttcaaaa |
102940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 240 - 360
Target Start/End: Complemental strand, 102867 - 102746
Alignment:
| Q |
240 |
gataacacctacctggtgacagtaaatgtaacgaagaatctctttgcgatgctcttgtgggaatacagaatcaaggtgtcctgtaatgtatacacagaat |
339 |
Q |
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|||| ||| ||| |||||||||||||||||||||||||||||||||||||| ||| ||||||| || |||||||| ||||| |||||||| |||||||| |
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| T |
102867 |
gatagcacatacttggtgacagtaaatgtaacgaagaatctctttgcgatgttctcgtgggaagacggaatcaagatgtccagtaatgtagacacagaaa |
102768 |
T |
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| Q |
340 |
acctacaa-gtaggaaattaat |
360 |
Q |
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|||| ||| |||| |||||||| |
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| T |
102767 |
acctgcaatgtagaaaattaat |
102746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 96; Significance: 6e-47; HSPs: 2)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 93279 - 93434
Alignment:
| Q |
18 |
acacgaatccagtttctggctctagcacaagcattgtcttgacctccatcaggtccttcaccaagaatccgcatacatatatagttgagtgcagtacaaa |
117 |
Q |
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||||||||||||| ||| ||||||||||||||||||| |||||| |||||||| |||| |||||||||||||||||||| ||||||||||||||| ||| |
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| T |
93279 |
acacgaatccagtgtcttgctctagcacaagcattgttttgaccgccatcaggaccttgtccaagaatccgcatacatatgtagttgagtgcagtagaaa |
93378 |
T |
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| Q |
118 |
acatggtactgtgaccctcaatttgtagcccccatccaccatcttcattcttcaaa |
173 |
Q |
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||||| | |||||||||||||| ||||||||||| || ||||||||||||| |||| |
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| T |
93379 |
acatgatgctgtgaccctcaatgtgtagcccccaccctccatcttcattctgcaaa |
93434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 249 - 329
Target Start/End: Original strand, 93578 - 93658
Alignment:
| Q |
249 |
tacctggtgacagtaaatgtaacgaagaatctctttgcgatgctcttgtgggaatacagaatcaaggtgtcctgtaatgta |
329 |
Q |
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| T |
93578 |
tacctggtgacaatatatgtaacgaagaatctctttacgatgttccggtgggaatacagaatcaagatgtccagtaatgta |
93658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 13051995 - 13051841
Alignment:
| Q |
19 |
cacgaatccagtttctggctctagcacaagcattgtcttgacctccatcaggtccttcaccaagaatccgcatacatatatagttgagtgcagtacaaaa |
118 |
Q |
| |
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|||||||||||||||| ||||| |||||||||||||||||||||||||| || ||||| |||||||| | || ||||||||||| |||||||||||||| |
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| T |
13051995 |
cacgaatccagtttcttgctcttgcacaagcattgtcttgacctccatccggcccttctccaagaattctcaggcatatatagttcagtgcagtacaaaa |
13051896 |
T |
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| Q |
119 |
catggtactgtgaccctcaatttgtagcccccatccaccatcttcattcttcaaa |
173 |
Q |
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|||||| |||||||||||||| ||||| ||||| || |||||||||||||||||| |
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| T |
13051895 |
catggtgctgtgaccctcaatgtgtagaccccaccctccatcttcattcttcaaa |
13051841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 13051729 - 13051643
Alignment:
| Q |
249 |
tacctggtgacagtaaatgtaacgaagaatctctttgcgatgctcttgtgggaatacagaatcaaggtgtcctgtaatgtatacaca |
335 |
Q |
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| T |
13051729 |
tacctgatgacaatatatgtaatgaagaatctctttgcaatgctcttgtgggaataccaaatcaagatgtcccgtaatgtaaacaca |
13051643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 22 - 173
Target Start/End: Original strand, 12138171 - 12138322
Alignment:
| Q |
22 |
gaatccagtttctggctctagcacaagcattgtcttgacctccatcaggtccttcaccaagaatccgcatacatatatagttgagtgcagtacaaaacat |
121 |
Q |
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||||||| ||||| ||||| ||||||||||||||||||||||||| ||| ||||| |||||||| |||||||||||||| ||||||| ||||||||||| |
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| T |
12138171 |
gaatccactttcttgctcttgcacaagcattgtcttgacctccattaggcccttctccaagaattcgcatacatatataattgagtgtggtacaaaacat |
12138270 |
T |
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| Q |
122 |
ggtactgtgaccctcaatttgtagcccccatccaccatcttcattcttcaaa |
173 |
Q |
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|||||| |||||||| || |||| || | || |||||||||||||||||| |
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| T |
12138271 |
ggtactatgaccctctatgtgtaatccgaaccctccatcttcattcttcaaa |
12138322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 343
Target Start/End: Original strand, 12138439 - 12138514
Alignment:
| Q |
268 |
taacgaagaatctctttgcgatgctcttgtgggaatacagaatcaaggtgtcctgtaatgtatacacagaatacct |
343 |
Q |
| |
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|||||||||||||| || |||||||||| || ||||| ||||||||| |||||||||||||| | |||||| |||| |
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| T |
12138439 |
taacgaagaatctccttacgatgctcttttgagaatatagaatcaagatgtcctgtaatgtacatacagaaaacct |
12138514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 22 - 173
Target Start/End: Original strand, 5670906 - 5671057
Alignment:
| Q |
22 |
gaatccagtttctggctctagcacaagcattgtcttgacctccatcaggtccttcaccaagaatccgcatacatatatagttgagtgcagtacaaaacat |
121 |
Q |
| |
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||||||| ||||| ||| ||||||||||||| |||| |||||||| || ||||| ||||| || ||||||||||| ||||||||| ||||||||||||| |
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| T |
5670906 |
gaatccattttcttgctttagcacaagcattttctttacctccatttggaccttctccaagtattcgcatacatatgtagttgagtacagtacaaaacat |
5671005 |
T |
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| Q |
122 |
ggtactgtgaccctcaatttgtagcccccatccaccatcttcattcttcaaa |
173 |
Q |
| |
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| || |||||||||| | ||||| |||||||| |||||||||||||||||| |
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| T |
5671006 |
gatattgtgaccctctacgtgtagtccccatcctccatcttcattcttcaaa |
5671057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 22 - 173
Target Start/End: Original strand, 5692652 - 5692803
Alignment:
| Q |
22 |
gaatccagtttctggctctagcacaagcattgtcttgacctccatcaggtccttcaccaagaatccgcatacatatatagttgagtgcagtacaaaacat |
121 |
Q |
| |
|
||||||| ||||| ||| ||||||||||||| |||| |||||||| || ||||| ||||| || ||||| ||||| ||||||||| | ||||||||||| |
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| T |
5692652 |
gaatccattttcttgctttagcacaagcattttctttacctccatttggaccttctccaagtattcgcatgcatatgtagttgagtactgtacaaaacat |
5692751 |
T |
|
| Q |
122 |
ggtactgtgaccctcaatttgtagcccccatccaccatcttcattcttcaaa |
173 |
Q |
| |
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| ||||||||||||| | ||||| |||||||| |||||||||||||||||| |
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| T |
5692752 |
gatactgtgaccctctacgtgtagtccccatcctccatcttcattcttcaaa |
5692803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 22 - 173
Target Start/End: Original strand, 5722996 - 5723147
Alignment:
| Q |
22 |
gaatccagtttctggctctagcacaagcattgtcttgacctccatcaggtccttcaccaagaatccgcatacatatatagttgagtgcagtacaaaacat |
121 |
Q |
| |
|
||||||| ||||| ||| ||||||||||||| |||| |||||||| || ||||| ||||| || ||||| ||||| ||||| ||| | ||||||||||| |
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| T |
5722996 |
gaatccattttcttgctttagcacaagcattttctttacctccatttggaccttctccaagtattcgcatgcatatgtagttaagtacggtacaaaacat |
5723095 |
T |
|
| Q |
122 |
ggtactgtgaccctcaatttgtagcccccatccaccatcttcattcttcaaa |
173 |
Q |
| |
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| ||||||||||||| | ||||| |||||||| |||||||||||||||||| |
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| T |
5723096 |
gatactgtgaccctctacgtgtagtccccatcctccatcttcattcttcaaa |
5723147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 321
Target Start/End: Original strand, 5693519 - 5693591
Alignment:
| Q |
249 |
tacctggtgacagtaaatgtaacgaagaatctctttgcgatgctcttgtgggaatacagaatcaaggtgtcct |
321 |
Q |
| |
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|||||| ||||| || |||||||| ||||||||||| |||| ||||| |||||||| |||||||| |||||| |
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| T |
5693519 |
tacctgatgacaatatatgtaacggagaatctctttccgatactctttggggaataccgaatcaagatgtcct |
5693591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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