View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13183_high_4 (Length: 379)
Name: NF13183_high_4
Description: NF13183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13183_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 293059 - 293283
Alignment:
| Q |
1 |
aaaactgttgcgtgggtttaaacaaatgttcaaatatggccattattagaaacattgaaatcaaaatggctgtggcaacaaaaccaaatgatattgcact |
100 |
Q |
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| T |
293059 |
aaaactgttgcgtgggtttaaacaaatgttcaaatatggccattattagaaacattgaaatcaaaatggctgtggcaacaaaaccaaatgatattgcact |
293158 |
T |
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| Q |
101 |
catagaagtcccaaagcttttccatggaccttcctcatcaa---------------------ctcctcctcctcctgtctgtgaatgtgacggacctgcg |
179 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
293159 |
catagaagtcccaaagcttttccatggaccttcctcatcaactcctcctcctcctcctcctcctcctcctcctcctgtctgtgaatgtgacggacctgcg |
293258 |
T |
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| Q |
180 |
tttgaagccgtgtatacgttccaca |
204 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
293259 |
tttgaagccgtgtatacgttccaca |
293283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 225 - 379
Target Start/End: Complemental strand, 293213 - 293059
Alignment:
| Q |
225 |
aggaggaggaggagttgatgaggaaggtccatggaaaagctttgggacttctatgagtgcaatatcatttggttttgttgccacagccattttgatttca |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
293213 |
aggaggaggaggagttgatgaggaaggtccatggaaaagctttgggacttctatgagtgcaatatcatttggttttgttgccacagccattttgatttca |
293114 |
T |
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| Q |
325 |
atgtttctaataatggccatatttgaacatttgtttaaacccacgcaacagtttt |
379 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
293113 |
atgtttctaataatggccatatttgaacatttgtttaaacccacgcaacagtttt |
293059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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