View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13183_high_5 (Length: 370)
Name: NF13183_high_5
Description: NF13183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13183_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 25 - 259
Target Start/End: Complemental strand, 35475811 - 35475571
Alignment:
| Q |
25 |
gacatcatcacaaccattttgagttcaaatatgggaacgtgagggggacaaataaagcagcagtataataaatataagaatatatcatgaaaggaatttt |
124 |
Q |
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| T |
35475811 |
gacatcatcacaaccattgtgagttcaaatatgggaacgtgagggggacaaataaagcagtagtataataaatataagaatatatcatgaaaggaatttt |
35475712 |
T |
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| Q |
125 |
ttacatttttaggatgaggataataagtttc------nnnnnnnnnnngagagggataataagttggtatcgtattnnnnnnnnntgtattcagtattac |
218 |
Q |
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| T |
35475711 |
ttacatttttaggatgaggataataagtttcttttgttttttttttttgagagggataataagttggtatcgtattaaaaaaaaatgtattcagtattac |
35475612 |
T |
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| Q |
219 |
tattgccataaatatagagtaagtaagaagattattgactt |
259 |
Q |
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| T |
35475611 |
tattgccataaatatagagtaagtaagaagattattgactt |
35475571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 246 - 343
Target Start/End: Complemental strand, 35475084 - 35474991
Alignment:
| Q |
246 |
aagattattgacttgagagtggtatataatctaatctaatctaacctgtnnnnnnnnnn-cattttgcatacaccacaaattcatctaacatgtgcatg |
343 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
35475084 |
aagattattgacttgagagtggtatataatctaatctaa-----cctgtaaaaaaaaaaacattttgcatacaccacaaattcatctaacatgtgcatg |
35474991 |
T |
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