View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13183_high_9 (Length: 365)
Name: NF13183_high_9
Description: NF13183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13183_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 16 - 338
Target Start/End: Original strand, 4074923 - 4075246
Alignment:
| Q |
16 |
ttgtaaacaacctttggtttgccaaactctaggttggccatgatttatctgtaatttcaaatctggtcacaacatagtggacccaactcagtagatatta |
115 |
Q |
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| T |
4074923 |
ttgtaaacaacctttggtttgccaaactctaggttggccatgatttatctgtaatttcaaatctggtcacaacatagtggacccaattcagtagatatta |
4075022 |
T |
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| Q |
116 |
gagcaatttgcccgattaaaagtcagataaactcgtactttacaaactatacgagtattgtccccacaacttaaaatttctcgattcatcaagaattgtc |
215 |
Q |
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| T |
4075023 |
gagcaatttgcccgattaaaagtcagataaactcgtgctttacaaactatacgtgtattgtccccacaacttaaaatttctcgattcatcacgatttgtc |
4075122 |
T |
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| Q |
216 |
atctcattttatttccatataccttttcac-ttcaactgtggtaagtaacaaccaaatttgactgtcttacagtgtcacaattaaccaataaatgaaatg |
314 |
Q |
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|||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4075123 |
atctcattttatttccatatactttttcactttcaactgtggtaagtaacaaccaaatttgactgtcttacagtgtcacaattaaccaataaatgaaatg |
4075222 |
T |
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| Q |
315 |
attcaaaaacagcgaagaacatat |
338 |
Q |
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||||||||||||||||| |||||| |
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| T |
4075223 |
attcaaaaacagcgaagcacatat |
4075246 |
T |
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