View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13184_high_2 (Length: 479)
Name: NF13184_high_2
Description: NF13184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13184_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 11 - 463
Target Start/End: Original strand, 17924124 - 17924576
Alignment:
| Q |
11 |
cataggctaacagaaactcataaaggctagcatgacctaaagttaaatttgctttgtgtaatagcgtcgaaagagaactccttccttgagcgtcagcaag |
110 |
Q |
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| T |
17924124 |
cataggctaacataaactcataaaggctagcatgacctaaagttaaatttgctttgtgtaatagcgtcgaaagagaactccttccttgagcgtcagcaag |
17924223 |
T |
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| Q |
111 |
tcgcaatcttcattcaatctcccacgctttgtagagagaggattacaacaatcaccatcaaacataatttcgtacgccccacttctcggctagtcattga |
210 |
Q |
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| T |
17924224 |
tcgcaatcttcattcaatctcccacgctttgtagagagaggattacaacaatcaccatcaaacataatttcgtacgccccacttctcggctagtcattga |
17924323 |
T |
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| Q |
211 |
agtcgaggagggtaatgacagtggatttatggtttatcgccgctgcatttcatgcaaaaagaaaacatatagaaactccatgtagaagttataataaaaa |
310 |
Q |
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| T |
17924324 |
agtcgatgagggtaatgacagtggatttatggtttatcgccgctgcatttcatgcaaaaagaaaacatatagaaactccatgtataagttataataaaaa |
17924423 |
T |
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| Q |
311 |
gtcatatgtgttgagcttgttgcgctaattcatttaaggtaatccaagggaatcaagaacttcatttcagcttgttctagcacattccaatagagccaat |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
17924424 |
gtcatatgtgttgagcttgttgcgctaattcatttaaggtaatccaagggaatcaagaactttatttcagcttgttctagcacatttcaatagagccaat |
17924523 |
T |
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| Q |
411 |
gaacatcattgcaaatttatttgggaattgaaatttctttgagaagatgaagt |
463 |
Q |
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| T |
17924524 |
gaacatcattgcaaatttatttgggaattgaaatttctttgagaagatgaagt |
17924576 |
T |
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