View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13184_high_6 (Length: 320)
Name: NF13184_high_6
Description: NF13184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13184_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 305
Target Start/End: Complemental strand, 47853141 - 47852855
Alignment:
| Q |
18 |
atgaaatagtggtggaattgtgattttgttgaagttatgaaatgtagcttttgtaataattatggttgtaacgtgattctgctaaagtcactttcaaacc |
117 |
Q |
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| T |
47853141 |
atgaaatagtggtggaattgtgattttgttgaagttatgaaatgtagcttttgtaataattatggttgtaacgtgattctgctaaagtcactttcaaatc |
47853042 |
T |
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| Q |
118 |
cgtctatccaatcacgcacttataaatgcatatgaagcacaaacacataaatcacacacctgacactggtaataatttgagtgatcgaatgtgattcatt |
217 |
Q |
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| T |
47853041 |
cgtctatccaatcacgcacttataaatgcatatgaagcacaaacacataaatcacacacc-gacactggtaataatttgagtgatcgaatgtgattcatt |
47852943 |
T |
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| Q |
218 |
ttaatcgccttgtttttaactaatgtacctaatgctgaaccacatcacacatacatcaccgtagcactcaatagcatagcactgattg |
305 |
Q |
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| T |
47852942 |
ttaatcgccttgtttttaactaatgtacctaatgctgaaccacatcacacatacatcaccgtagcactcaatagcatagcactgattg |
47852855 |
T |
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