View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13184_low_1 (Length: 737)
Name: NF13184_low_1
Description: NF13184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13184_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 156; Significance: 2e-82; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 523 - 722
Target Start/End: Original strand, 37215903 - 37216100
Alignment:
| Q |
523 |
taaccaaataaaaatgcaagaatatacaaacctcttgaacagttttagaccatttggagttccacatctgaaactgaggcagatctctgatttcatggtt |
622 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
37215903 |
taaccaaataaaaatgcaagaatatacaaacctcttgagcagttttagaccatttggagttccacatctgaaaccaaggcagatct--gatttcatggtt |
37216000 |
T |
|
| Q |
623 |
gcagtcatagtaggagtttcacccctgaaatcgataaatgcaactcatgtaaatataacataattaaaattgnnnnnnngtgtgcatataatcccctatg |
722 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
37216001 |
gcagtcatagtaggagtttcacccctgaaatcgataaatgcaactcatgtaaatataacataattaaaattgtttttttgtgtgcatataatcccctatg |
37216100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 461 - 511
Target Start/End: Original strand, 37215072 - 37215122
Alignment:
| Q |
461 |
gcatgtgaacaccaaatgatattgaatctacacttacatgttaattaatga |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37215072 |
gcatgtgaacaccaaatgatattgaatctacacttacatgttaattaatga |
37215122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 390 - 451
Target Start/End: Original strand, 37215406 - 37215465
Alignment:
| Q |
390 |
ttccacccctgaaatttgtaagtgcaactcatgtgtaaatatacataattaaaattgcatac |
451 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
37215406 |
ttccatccctgaaatttgtaagtgcaactca--tgtaaatatacgtaattaaaattgcatac |
37215465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 256
Target Start/End: Original strand, 37216015 - 37216072
Alignment:
| Q |
199 |
agtttgacccctgaaattgatagatgtgactcatgtaaatatagcataattaaaattg |
256 |
Q |
| |
|
||||| ||||||||||| |||| ||| ||||||||||||||| |||||||||||||| |
|
|
| T |
37216015 |
agtttcacccctgaaatcgataaatgcaactcatgtaaatataacataattaaaattg |
37216072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 461 - 510
Target Start/End: Original strand, 37215482 - 37215529
Alignment:
| Q |
461 |
gcatgtgaacaccaaatgatattgaatctacacttacatgttaattaatg |
510 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
37215482 |
gcatgtgagaaccaaatgatattgaatct--acttacatgttaattaatg |
37215529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 205 - 251
Target Start/End: Original strand, 37218402 - 37218447
Alignment:
| Q |
205 |
acccctgaaattgatagatgtgactcatgtaaatatagcataattaa |
251 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||| ||||||||| |
|
|
| T |
37218402 |
acccctgaaattgataaatgtga-tcatgtaaatataacataattaa |
37218447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University