View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13184_low_11 (Length: 248)
Name: NF13184_low_11
Description: NF13184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13184_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 37753673 - 37753471
Alignment:
| Q |
18 |
cactcaaatgtttaccacttcatgctgcacatcattaaatgaagattgtacaatacagcaagtcgatctcattctaaagtaacaaaataaatgcctaaga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| || |
|
|
| T |
37753673 |
cactcaaatgtttaccacttcatgctgcacatcattaaatgaagattgtacaatatagcaagtcgatctgattctaaagtaacaaaataaatgcctacga |
37753574 |
T |
|
| Q |
118 |
gtacaacggtttcatgactgcaccctagaagctcccgtttattattttgtttagtttgtgttagatctagccattttaatccattaaaatctttgttgat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
37753573 |
gtacaacggtttcatgactgcaccctagaagctcccgtttattattttgtttagtttgtgttagacctagccattttaatccattaaaatctttgttgat |
37753474 |
T |
|
| Q |
218 |
att |
220 |
Q |
| |
|
||| |
|
|
| T |
37753473 |
att |
37753471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University