View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13184_low_13 (Length: 240)
Name: NF13184_low_13
Description: NF13184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13184_low_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 54618802 - 54619025
Alignment:
| Q |
1 |
ttataatctgtaagaacaactagtaacaaaatgataaaagaatcattagtnnnnnnnnnnn-----gaataaaagaatcataaatcgcaatacaatgaac |
95 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
54618802 |
ttataatctgtaagaacaactagtaacaaaatgataaaagaatcattagtaaaaaaaaagaaaaaagaataaaagaatcataaatcgcaatacaatgaac |
54618901 |
T |
|
| Q |
96 |
acaatttttgtttacgcaaaccggccaagtgtgcctacattcgtgactacatagtagctatacttatgatctatattccaacaattttcatgctgaaccg |
195 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54618902 |
acaatctttgtttacgcaaaccggccaagtgtgcctacattcgtgactacatagtagctatacttatgatctatattccaacaattttcatgctgaaccg |
54619001 |
T |
|
| Q |
196 |
tgaaagcgatagccctcgcaccccagt |
222 |
Q |
| |
|
||| ||||| ||||||||||||||| |
|
|
| T |
54619002 |
tgacagcga---ccctcgcaccccagt |
54619025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University