View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13184_low_2 (Length: 519)
Name: NF13184_low_2
Description: NF13184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13184_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 8 - 501
Target Start/End: Complemental strand, 40000053 - 39999558
Alignment:
| Q |
8 |
attattctttgattttcttaacatgttaggttaatggaaaatgnnnnnnnn-cttcatnnnnnnngtgtaaatattttgaattaatgctaataagaaaac |
106 |
Q |
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| T |
40000053 |
attattctttgattttcttaacatgttaggttaatggtaaatgtttttttttcttcataaaaaaagtgtaaatattttgaattaatgctaataagaaaac |
39999954 |
T |
|
| Q |
107 |
aatacatgttagagctagccaagcatcatgtgagtttttaagctatataccnnnnnnnnattatgttagctgcaatagtaggccggcctgggggtataca |
206 |
Q |
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| T |
39999953 |
aatacatgttagagctagccaagcatcatgtgagtttttaagctatataccttttttttattatgttagctgcaatagtaggccggcctggg--tataca |
39999856 |
T |
|
| Q |
207 |
cagcataatttccaataaactcataacgtggtaggactagtgtttctttgcataatactttccatagtgatgaatttaattccattaaaatgagaagtgt |
306 |
Q |
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| T |
39999855 |
cagcataatttcctataaactcataacgtggtaggactagtgtttctttgcataatactttccatagtgatgaatttaattccattaaaatgagaagtgt |
39999756 |
T |
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| Q |
307 |
atttaaaaggaaaagcacttaattgcaacccttgtgacaatttggaagccaccctctacaaagaagatgatattatcttgtac----tatgtggtagctt |
402 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
39999755 |
atttaaaaggaaaagcacttaattgcaa-ccttgtgacaatttggaagccaccctctacaaagaagatgatattatcttgtactatgtatgtggtggctt |
39999657 |
T |
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| Q |
403 |
gagtttacttaaggcggcgcaagtgacatcaatccaccgcatggtaaggccaatgtagctccgatttggattctctatacttctatacaaccacgttat |
501 |
Q |
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| T |
39999656 |
gagtttacttaaggccacgcaagtgacatcaatccaccgcatggtaaggccaatgtagctccgatttggattctcgattcttttatacaaccacgttat |
39999558 |
T |
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