View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13184_low_6 (Length: 359)
Name: NF13184_low_6
Description: NF13184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13184_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-166; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 36 - 353
Target Start/End: Complemental strand, 45303906 - 45303586
Alignment:
| Q |
36 |
gagtgcatgctcatttgaaatccgtgcatgccctatgttttagtttttgtgttgaggttaattaaattctttctttgtttctacaggaatctgtttcaat |
135 |
Q |
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| T |
45303906 |
gagtgcatgctcatttgaaattcgtgcatgccctatgttttagtttttgagttgaggttaattaaattctttctttgtttctacaggaatctgtttcaat |
45303807 |
T |
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| Q |
136 |
tcaaaggtcagcagcagca---aaagcagatggatggctccaattcgatgaagcagaattacagcaaagaagaaactttatggaaaggaatgccacgtgg |
232 |
Q |
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| T |
45303806 |
tcaaaggtcagcagcagcagcaaaagcagatggatggctccaattcgatgaagcagaattacagcaaagaagaaactttatggaaaggaatgccacgtgg |
45303707 |
T |
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| Q |
233 |
catatgatgcagttaacttcttcttgtcctacagctagcatgtccaccacaaccacagtaacaactagacttatggacccaaaactcatcaagacccatg |
332 |
Q |
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| T |
45303706 |
catatgatgcagttaacttcttcttgtcctacagctagcatgtccaccacaaccacagtaacaactagacttatggacccaaaactcatcaagacccatg |
45303607 |
T |
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| Q |
333 |
aactcaacttattcatctcac |
353 |
Q |
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| T |
45303606 |
aactcaacttattcatttcac |
45303586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 251
Target Start/End: Complemental strand, 45150682 - 45150590
Alignment:
| Q |
159 |
cagatggatggctccaattcgatgaagcagaattacagcaaagaagaaactttatggaaaggaatgccacgtggcatatgatgcagttaactt |
251 |
Q |
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| T |
45150682 |
cagatagacggctccaatttgatgaagctgaactacagcaagaaagaaactttatggaaaggaatgtcatgtggcatatgatgctgttaactt |
45150590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 313
Target Start/End: Complemental strand, 45150492 - 45150446
Alignment:
| Q |
267 |
ctagcatgtccaccacaaccacagtaacaactagacttatggaccca |
313 |
Q |
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| T |
45150492 |
ctagcatggccatcacaaccacagtaacaactacactaatggaccca |
45150446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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