View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13184_low_9 (Length: 259)

Name: NF13184_low_9
Description: NF13184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13184_low_9
NF13184_low_9
[»] scaffold0257 (1 HSPs)
scaffold0257 (1-242)||(17533-17774)
[»] chr3 (21 HSPs)
chr3 (35-242)||(28053679-28053886)
chr3 (35-242)||(28064104-28064311)
chr3 (59-240)||(28183973-28184154)
chr3 (35-238)||(28002386-28002589)
chr3 (35-238)||(28147942-28148145)
chr3 (50-238)||(28132158-28132346)
chr3 (50-238)||(28481358-28481546)
chr3 (59-240)||(28159409-28159590)
chr3 (50-238)||(28510530-28510718)
chr3 (35-242)||(27918576-27918783)
chr3 (50-238)||(28081951-28082139)
chr3 (44-240)||(28035634-28035830)
chr3 (44-240)||(27975558-27975754)
chr3 (44-240)||(11418937-11419133)
chr3 (65-238)||(27460919-27461089)
chr3 (38-240)||(17746019-17746218)
chr3 (38-240)||(19047339-19047538)
chr3 (102-238)||(27392146-27392279)
chr3 (44-118)||(26627822-26627896)
chr3 (208-240)||(26142311-26142343)
chr3 (208-240)||(26180616-26180648)
[»] chr2 (2 HSPs)
chr2 (136-238)||(8019969-8020071)
chr2 (131-242)||(22391333-22391444)
[»] chr7 (1 HSPs)
chr7 (111-238)||(8693252-8693379)
[»] scaffold0043 (1 HSPs)
scaffold0043 (149-238)||(54681-54770)


Alignment Details
Target: scaffold0257 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 17774 - 17533
Alignment:
Q  1 cgtagtcaagacccaaacgatcaatttcattatagaagtctggtgttgatgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttac 100  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  17774 cgtagccaagacccaaacgatgaatttcattatagaagtctggtgttgatgctgaagccagagatagtttttgacaattctgtatgaaacggtattttac 17675  T
Q  101 agcttgaaattgaattcccagggcatgactgaggcttggtagattttcaaatactacaaattttagatttggaatctccactttgtgatcatcaccttca 200  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  17674 agcttgaaattgaattccctgggcatgactgagtcttggtagattttcaaatactacaaattttagatttggaatctccattttgtgatcatcaccttca 17575  T
Q  201 cttgcagatatttcctctagctcatctgcttctcttatcact 242  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  17574 cttgcagatatttcctctagctcatctgcttctcttatcact 17533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 35 - 242
Target Start/End: Complemental strand, 28053886 - 28053679
Alignment:
Q  35 gaagtctggtgttgatgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgagg 134  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||| || |||||||||||    
T  28053886 gaagtctagtgttgatgctgaagtcagagatagtttttgacaattcagtatgaaacgatgttttacagcttgaaattgaattccctggtcatgactgagg 28053787  T
Q  135 cttggtagattttcaaatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctc 234  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||    
T  28053786 cttggtagattttcaaatactacaagttttagatttggaatctccactttgtgatcatcactttcacttacaaatatttcctctagctcatctgcttctc 28053687  T
Q  235 ttatcact 242  Q
    ||||||||    
T  28053686 ttatcact 28053679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 35 - 242
Target Start/End: Complemental strand, 28064311 - 28064104
Alignment:
Q  35 gaagtctggtgttgatgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgagg 134  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||| || |||||||||||    
T  28064311 gaagtctagtgttgatgctgaagtcagagatagtttttgacaattcagtatgaaacgatgttttacagcttgaaattgaattccctggtcatgactgagg 28064212  T
Q  135 cttggtagattttcaaatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctc 234  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||    
T  28064211 cttggtagattttcaaatactacaagttttagatttggaatctccactttgtgatcatcactttcacttacaaatatttcctctagctcatctgcttctc 28064112  T
Q  235 ttatcact 242  Q
    ||||||||    
T  28064111 ttatcact 28064104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 59 - 240
Target Start/End: Complemental strand, 28184154 - 28183973
Alignment:
Q  59 cagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggtagattttcaaatactaca 158  Q
    |||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  28184154 cagagagagtttttgacaattccgtatgaaacgattttttacagcttgaaattgaattctctgggcatgactgaggcttggtagattttcaaatactaca 28184055  T
Q  159 aattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctcttatca 240  Q
     ||| |||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||    
T  28184054 cattctagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctccagctcatctgcttctcttatca 28183973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 35 - 238
Target Start/End: Complemental strand, 28002589 - 28002386
Alignment:
Q  35 gaagtctggtgttgatgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgagg 134  Q
    |||||||| |||||||||||||| |||||||||||||||||||||| |||||| ||| | ||||||||||| ||||||||||||| |  |||||| ||||    
T  28002589 gaagtctgctgttgatgctgaagtcagagatagtttttgacaattcagtatgagacgatgttttacagcttcaaattgaattccctgatcatgacagagg 28002490  T
Q  135 cttggtagattttcaaatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctc 234  Q
    ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||| ||| ||||||||||    
T  28002489 cttcgtagattttcaaatactacaaattttagatttggaatctcgactttgtgatcatcaccttcacttccaaatatttcctctacctcgtctgcttctc 28002390  T
Q  235 ttat 238  Q
    ||||    
T  28002389 ttat 28002386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 35 - 238
Target Start/End: Complemental strand, 28148145 - 28147942
Alignment:
Q  35 gaagtctggtgttgatgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgagg 134  Q
    |||||||||||||||  |||||| |||||||||||||||||||||| |||||||||| | ||||||| ||||||||||||||||| | ||||||  ||||    
T  28148145 gaagtctggtgttgactctgaagccagagatagtttttgacaattcagtatgaaacgatgttttacaacttgaaattgaattccctgagcatgatagagg 28148046  T
Q  135 cttggtagattttcaaatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctc 234  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||  ||||||| || |||||||||||| ||||||||||||||    
T  28148045 cttggtagattttcaaatattacaagttttagatttggaatctccactttgtgatcatcaaattcacttacaaatatttcctctaactcatctgcttctc 28147946  T
Q  235 ttat 238  Q
    ||||    
T  28147945 ttat 28147942  T

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Target: chr3; HSP #6
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 50 - 238
Target Start/End: Complemental strand, 28132346 - 28132158
Alignment:
Q  50 tgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggtagattttca 149  Q
    |||||||| |||||| ||||||||||||||| |||||||||| | ||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||    
T  28132346 tgctgaagtcagagagagtttttgacaattctgtatgaaacgatgttttacatcttgaaattgaattccctgggcatgattgaggcttggtagattttca 28132247  T
Q  150 aatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctcttat 238  Q
    |||| ||||| ||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||| ||||||||||||||    
T  28132246 aatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctaactcgtctgcttctcttat 28132158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 50 - 238
Target Start/End: Original strand, 28481358 - 28481546
Alignment:
Q  50 tgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggtagattttca 149  Q
    |||||||| |||||| ||||||||||||||| |||||||||| | ||||||||||||||||||||||||| |  |||||| |||||||||||||||||||    
T  28481358 tgctgaagccagagagagtttttgacaattcagtatgaaacgatgttttacagcttgaaattgaattccctgatcatgacagaggcttggtagattttca 28481457  T
Q  150 aatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctcttat 238  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||| | ||| ||||||||||||||    
T  28481458 aatactacaaattttagatttggaatctcgactttgtgatcatcaccttcacttccaaatatttcctcgaactcgtctgcttctcttat 28481546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 59 - 240
Target Start/End: Complemental strand, 28159590 - 28159409
Alignment:
Q  59 cagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggtagattttcaaatactaca 158  Q
    |||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||    
T  28159590 cagagagagtttttgacaattccgtatgaaacgattttttacagcttgaaattgaattctctgggcatgactgaggattggtagattttcaaatactaca 28159491  T
Q  159 aattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctcttatca 240  Q
     ||| |||||||||||||| |||||| ||||||||||||||| || || ||||||||||||||||||||| |||||||||||    
T  28159490 cattctagatttggaatcttcactttctgatcatcaccttcaattacaaatatttcctctagctcatctgattctcttatca 28159409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 50 - 238
Target Start/End: Original strand, 28510530 - 28510718
Alignment:
Q  50 tgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggtagattttca 149  Q
    |||||||| |||||| |||||||||||||||  ||| ||||| | ||||||||||||||||||||||||| | ||||||  |||||||||||||||||||    
T  28510530 tgctgaagccagagagagtttttgacaattcattattaaacgatgttttacagcttgaaattgaattccctgagcatgatagaggcttggtagattttca 28510629  T
Q  150 aatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctcttat 238  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||    
T  28510630 aatattacaagttttagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctaactcatctgcttctcttat 28510718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 35 - 242
Target Start/End: Complemental strand, 27918783 - 27918576
Alignment:
Q  35 gaagtctggtgttgatgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgagg 134  Q
    |||||||  |||||||| ||||| |||||||||| ||||||||||| |||||||||| | |||||||| |||||| ||||||||| || ||| |||||||    
T  27918783 gaagtctattgttgatgatgaagccagagatagtgtttgacaattctgtatgaaacgatgttttacagtttgaaaatgaattccctggacatcactgagg 27918684  T
Q  135 cttggtagattttcaaatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctc 234  Q
    |||||||||||||||||||||| | ||| ||||||||||||||||||||| ||||||||||||||| ||||| ||||||| || ||||||||||||||||    
T  27918683 cttggtagattttcaaatactagatattctagatttggaatctccactttctgatcatcaccttcatttgcaaatatttcatccagctcatctgcttctc 27918584  T
Q  235 ttatcact 242  Q
    ||||||||    
T  27918583 ttatcact 27918576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 50 - 238
Target Start/End: Complemental strand, 28082139 - 28081951
Alignment:
Q  50 tgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggtagattttca 149  Q
    |||||||| |||||| ||||||||||||||| |||||||||| ||| ||||||||| ||||||||||||  ||||||||| ||||||||| |||||||||    
T  28082139 tgctgaagccagagagagtttttgacaattctgtatgaaacgatatgttacagcttcaaattgaattccttgggcatgacagaggcttggaagattttca 28082040  T
Q  150 aatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctcttat 238  Q
    ||||||||||||  ||||| |||||||||||||||||||||||||||||| ||| || |||||||||||| ||||||||||||||||||    
T  28082039 aatactacaaatcgtagatatggaatctccactttgtgatcatcaccttcgcttacaaatatttcctctaactcatctgcttctcttat 28081951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 44 - 240
Target Start/End: Complemental strand, 28035830 - 28035634
Alignment:
Q  44 tgttgatgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggtaga 143  Q
    |||||||| ||||| |||||||||| ||||||||||| | |||||||| | |||||||| |||||| ||||||| | || |||||||||| |||||||||    
T  28035830 tgttgatgatgaagccagagatagtgtttgacaattctgcatgaaacgttgttttacagtttgaaaatgaattctctggacatgactgagtcttggtaga 28035731  T
Q  144 ttttcaaatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctcttatca 240  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| || | || |||||||||||||||||    
T  28035730 ttttcaaacactacaaattttagatttggaatctccactttctgatcatcaccttcacttgcaaatatttcttccatcttatctgcttctcttatca 28035634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 44 - 240
Target Start/End: Complemental strand, 27975754 - 27975558
Alignment:
Q  44 tgttgatgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggtaga 143  Q
    |||||||||| | | ||| || ||||||||||||||| |||||  | | | ||||||||||||||||||||||||  || |||||  |||||||||||||    
T  27975754 tgttgatgctaacgccagggagagtttttgacaattctgtatggcatgatgttttacagcttgaaattgaattccttggtcatgatggaggcttggtaga 27975655  T
Q  144 ttttcaaatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctcttatca 240  Q
    |||||||||| ||||| | | ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||    
T  27975654 ttttcaaatattacaactatcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcagctgcttctcttatca 27975558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 44 - 240
Target Start/End: Complemental strand, 11419133 - 11418937
Alignment:
Q  44 tgttgatgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggtaga 143  Q
    ||||| || ||||| |||||| ||||||||||||||| |||||||||| ||||||||||||||| ||||||||| | ||| ||  | ||  ||||| |||    
T  11419133 tgttgttgatgaagccagagagagtttttgacaattctgtatgaaacgatattttacagcttgatattgaattctctgggtatcccagaaacttggcaga 11419034  T
Q  144 ttttcaaatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctcttatca 240  Q
    ||||||||||||| |||||| ||||| ||||||||   ||| |||| |||| |||||||| || |||||||||||||||||||||| ||||||||||    
T  11419033 ttttcaaatactaaaaatttaagattcggaatctcgcttttctgatgatcatcttcacttacaaatatttcctctagctcatctgcgtctcttatca 11418937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 65 - 238
Target Start/End: Original strand, 27460919 - 27461089
Alignment:
Q  65 tagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggtagattttcaaatactacaaatttt 164  Q
    |||||||||||||||| |||  ||| | | |||||||||||| | |||||||||| || |||||| |||||||||||||||| |||||||||||| ||||    
T  27460919 tagtttttgacaattctgtaccaaatgatgttttacagcttggagttgaattccctggacatgacagaggcttggtagatttacaaatactacaagtttt 27461018  T
Q  165 agatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctcttat 238  Q
    |||||||||||||||| ||| ||||||||   ||||||| || ||||||||||||||   ||||||||||||||    
T  27461019 agatttggaatctccagtttctgatcatctttttcacttacaaatatttcctctagc---tctgcttctcttat 27461089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 38 - 240
Target Start/End: Original strand, 17746019 - 17746218
Alignment:
Q  38 gtctggtgttgatgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggctt 137  Q
    ||||| ||||| |||||||| |||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||  | || ||||  ||||||    
T  17746019 gtctgctgttgttgctgaagccagagagagtttttgacaattccgtatgaaacgatgttttacagcttgaaattgaattccttgagcttgacaaaggctt 17746118  T
Q  138 ggtagattttcaaatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctctta 237  Q
    ||||| ||  ||||| | |||| ||| || || ||||| |  |||||    ||||||||||||||| || |||||||||||||||||| |||||||||||    
T  17746119 ggtaggttgacaaatgccacaactttcagtttcggaatattgacttt---ctcatcaccttcacttccaaatatttcctctagctcatatgcttctctta 17746215  T

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Target: chr3; HSP #17
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 38 - 240
Target Start/End: Original strand, 19047339 - 19047538
Alignment:
Q  38 gtctggtgttgatgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggctt 137  Q
    ||||| ||||| |||||||| |||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||  | || ||||  ||||||    
T  19047339 gtctgctgttgttgctgaagccagagagagtttttgacaattccgtatgaaacgatgttttacagcttgaaattgaattccttgagcttgacaaaggctt 19047438  T
Q  138 ggtagattttcaaatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctctta 237  Q
    ||||| ||  ||||| | |||| ||| || || ||||| |  |||||    ||||||||||||||| || |||||||||||||||||| |||||||||||    
T  19047439 ggtaggttgacaaatgccacaactttcagtttcggaatattgacttt---ctcatcaccttcacttccaaatatttcctctagctcatatgcttctctta 19047535  T

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Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 238
Target Start/End: Original strand, 27392146 - 27392279
Alignment:
Q  102 gcttgaaattgaattcccagggcatgactgaggcttggtagattttcaaatactacaaattttagatttggaatctccactttgtgatcatcaccttcac 201  Q
    |||||||| ||||||||  |||  || |||||||||||||| ||  ||||| |||||||||| ||||||||||| |  ||||| |   ||||| |||| |    
T  27392146 gcttgaaaatgaattccttgggtctggctgaggcttggtaggttgacaaatgctacaaatttcagatttggaatattgactttct---catcaacttcgc 27392242  T
Q  202 ttgcagatatttcctctagctcatctgcttctcttat 238  Q
     | || |||||||||||||||||||||||||||||||    
T  27392243 atacaaatatttcctctagctcatctgcttctcttat 27392279  T

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Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 118
Target Start/End: Complemental strand, 26627896 - 26627822
Alignment:
Q  44 tgttgatgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcc 118  Q
    ||||||||||||||  ||||| ||||||||||||||| |||  ||||| | || |||| | ||||||||||||||    
T  26627896 tgttgatgctgaagttagagagagtttttgacaattctgtacaaaacgattttctacatcctgaaattgaattcc 26627822  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 26142311 - 26142343
Alignment:
Q  208 atatttcctctagctcatctgcttctcttatca 240  Q
    |||||||||||||||||| ||||||||||||||    
T  26142311 atatttcctctagctcatttgcttctcttatca 26142343  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 26180616 - 26180648
Alignment:
Q  208 atatttcctctagctcatctgcttctcttatca 240  Q
    |||||||||||||||||| ||||||||||||||    
T  26180616 atatttcctctagctcatttgcttctcttatca 26180648  T

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Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 136 - 238
Target Start/End: Complemental strand, 8020071 - 8019969
Alignment:
Q  136 ttggtagattttcaaatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctct 235  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||    
T  8020071 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct 8019972  T
Q  236 tat 238  Q
    |||    
T  8019971 tat 8019969  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 242
Target Start/End: Complemental strand, 22391444 - 22391333
Alignment:
Q  131 gaggcttggtagattttcaaatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgct 230  Q
    |||||||||||| ||  |||||  ||||| |||||||||||| || |  ||||| |||||| |  |||||| | || ||||||||||||||| || ||||    
T  22391444 gaggcttggtaggttgacaaatgatacaacttttagatttggcatattgactttctgatcaccttcttcacatacaaatatttcctctagcttatatgct 22391345  T
Q  231 tctcttatcact 242  Q
    || |||||||||    
T  22391344 tcacttatcact 22391333  T

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Target: chr7 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 111 - 238
Target Start/End: Original strand, 8693252 - 8693379
Alignment:
Q  111 tgaattcccagggcatgactgaggcttggtagattttcaaatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagata 210  Q
    ||||||||  ||||||||| ||||||||| |||||||||||||||||| ||| ||||||||||||||| ||||| | ||||  ||||||||||||| |||    
T  8693252 tgaattccttgggcatgacagaggcttggaagattttcaaatactacatattctagatttggaatctcgactttctcatcacgaccttcacttgcaaata 8693351  T
Q  211 tttcctctagctcatctgcttctcttat 238  Q
    |||| || ||||||||||||||||||||    
T  8693352 tttcatccagctcatctgcttctcttat 8693379  T

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Target: scaffold0043 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 238
Target Start/End: Original strand, 54681 - 54770
Alignment:
Q  149 aaatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctcttat 238  Q
    |||| |||||| ||| ||||||||||  |  ||||| |||||| |  |||||| | || |||||||||||||||||| ||||||||||||    
T  54681 aaatgctacaactttcagatttggaagattgactttctgatcaccttcttcacatacaaatatttcctctagctcatgtgcttctcttat 54770  T

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