View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13185_high_1 (Length: 682)
Name: NF13185_high_1
Description: NF13185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13185_high_1 |
 | |
|
| [»] scaffold0341 (4 HSPs) |
| | |
|
Alignment Details
Target: scaffold0341 (Bit Score: 564; Significance: 0; HSPs: 4)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 67 - 664
Target Start/End: Original strand, 538 - 1132
Alignment:
| Q |
67 |
ggtgttggtgatggtgatgatgacgacgatgatgaaggtgaatcttgtgtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtc |
166 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
538 |
ggtgttggtgatggtgatgatgacg---atgatgaaggtgaatcttgagtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtc |
634 |
T |
|
| Q |
167 |
taagaaatctaccacctatacccattctattgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatc |
266 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
635 |
taagaaatctaccacctatacctattctattgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatc |
734 |
T |
|
| Q |
267 |
aggtgtgcattgaacaagagcaaatatggtttgattattatttggaccaatcacatcatttcctacagcatatttaaggtcactttcccccgatgcagct |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
735 |
aggtgtgcattgaacaagagcaaatatggtttgattattatttggaccaatcacatcacttcctacagcatatttaaggtcactttcccccgatgcagct |
834 |
T |
|
| Q |
367 |
atattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcctttgttgcgttctgcaaattccatgcaatcatggcaggtc |
466 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
835 |
aaattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcctttgttgcgttctgcaaattccatgcaatcatggcaggtc |
934 |
T |
|
| Q |
467 |
ccatttcattgataccaaatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgacaaagttg |
566 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
935 |
ccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgacaaagttg |
1034 |
T |
|
| Q |
567 |
tgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgttta |
664 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1035 |
tgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgttta |
1132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 67 - 664
Target Start/End: Original strand, 8191 - 8786
Alignment:
| Q |
67 |
ggtgttggtgatggtgatgatgacgacgatgatgaaggtgaatcttgtgtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtc |
166 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8191 |
ggtgttggtgatggtgatgatgacg---atgatgaaggtgaatcttgagtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtc |
8287 |
T |
|
| Q |
167 |
taagaaatctaccacctatacccattctattgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatc |
266 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8288 |
taagaaatctaccacctatacctattctattgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatc |
8387 |
T |
|
| Q |
267 |
aggtgtgcattgaacaagagcaaatatggtttgattattatttggaccaatcacatcatttcctacagcatatttaaggtcactttcccccgatgcagct |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8388 |
aggtgtgcattgaacaagagcaaatatggtttgattattatttggaccaatcacatcacttcctacagcatatttaaggtcactttcccccgatgcagct |
8487 |
T |
|
| Q |
367 |
atattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcctttgttgcgttctgcaaattccatgcaatcatggcaggtc |
466 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8488 |
aaattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcctttgttgcgttctgcaaattccatgcaatcatggcaggtc |
8587 |
T |
|
| Q |
467 |
ccatttcattgataccaaatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcg-attttgacaaagtt |
565 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8588 |
ccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgtattttgacaaagtt |
8687 |
T |
|
| Q |
566 |
gtgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgttta |
664 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8688 |
gtgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgttta |
8786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 500 - 554
Alignment:
| Q |
2 |
gaggaggagcagagaatgatggcactgatgttggggaaggtgttggtgatggtga |
56 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
500 |
gaggaggagctgagaatgatggcactgatgctggtgaaggtgttggtgatggtga |
554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 8153 - 8207
Alignment:
| Q |
2 |
gaggaggagcagagaatgatggcactgatgttggggaaggtgttggtgatggtga |
56 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
8153 |
gaggaggagctgagaatgatggcactgatgctggtgaaggtgttggtgatggtga |
8207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 564; Significance: 0; HSPs: 13)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 67 - 664
Target Start/End: Original strand, 6506513 - 6507107
Alignment:
| Q |
67 |
ggtgttggtgatggtgatgatgacgacgatgatgaaggtgaatcttgtgtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtc |
166 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6506513 |
ggtgttggtgatggtgatgatgacg---atgatgaaggtgaatcttgagtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtc |
6506609 |
T |
|
| Q |
167 |
taagaaatctaccacctatacccattctattgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatc |
266 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6506610 |
taagaaatctaccacctatacctattctattgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatc |
6506709 |
T |
|
| Q |
267 |
aggtgtgcattgaacaagagcaaatatggtttgattattatttggaccaatcacatcatttcctacagcatatttaaggtcactttcccccgatgcagct |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6506710 |
aggtgtgcattgaacaagagcaaatatggtttgattattatttggaccaatcacatcacttcctacagcatatttaaggtcactttcccccgatgcagct |
6506809 |
T |
|
| Q |
367 |
atattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcctttgttgcgttctgcaaattccatgcaatcatggcaggtc |
466 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6506810 |
aaattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcctttgttgcgttctgcaaattccatgcaatcatggcaggtc |
6506909 |
T |
|
| Q |
467 |
ccatttcattgataccaaatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgacaaagttg |
566 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6506910 |
ccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgacaaagttg |
6507009 |
T |
|
| Q |
567 |
tgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgttta |
664 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6507010 |
tgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgttta |
6507107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 119 - 662
Target Start/End: Complemental strand, 6522161 - 6521630
Alignment:
| Q |
119 |
gttgatagaaaagtgaattggtttcatatctcaaataacaactgggtctaagaaatctaccacctatacccattctattgtcacaacaatttgggatttc |
218 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||| |||||||||||||| || |||| |||||| ||| |||||| ||||||||||| ||||| |
|
|
| T |
6522161 |
gttgatagaagaatgaattggtttcatatctcaaattacaactgggtctaacaattctagcaccta-acc-----tattgttacaacaatttgaaatttc |
6522068 |
T |
|
| Q |
219 |
tttgatagatttatccaaacattcatcacacaatgtttcagacaaatcaggtgtgcattgaacaagagcaaatatggtttgattattatttggaccaatc |
318 |
Q |
| |
|
||||||||||| | ||||||| |||||||| ||||||| |||||||||||||||||||||||||||| || |||||||||| |||||| ||||||||| | |
|
|
| T |
6522067 |
tttgatagattgaaccaaacaatcatcacataatgttttagacaaatcaggtgtgcattgaacaagaccatatatggtttggttattacttggaccaacc |
6521968 |
T |
|
| Q |
319 |
acatcatttcctacagcatatttaaggtcactttcccccgatgcagctatattttttaaattatacaacaaatttttcagccctttatcaaattcatctt |
418 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||| ||||||||| ||||| ||||| ||| ||| ||| |||| | |||| | ||| ||| |
|
|
| T |
6521967 |
tcatcacttcctacagcatatttaaggtcactgtcccctgatgcagctctatttcttaaactatccaaaaaaaaattcaccactttgttaaactca---- |
6521872 |
T |
|
| Q |
419 |
cgacttcctttgttgcgttctgcaaattccatgcaatcatggcaggtcccatttcattgataccaaatattgaacggtgtgaggaacgcaacatgcattt |
518 |
Q |
| |
|
|| || ||||||||||| | |||||| ||| |||||||| ||||| |||| ||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
6521871 |
--acctcatttgttgcgttgtttgtattccaaacaaaataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtaacgcaacatgcattc |
6521774 |
T |
|
| Q |
519 |
ttcatcgtcgtaccatccaattgcttcttttcgattttgacaaagttgtgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttg |
618 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||| | ||||| |
|
|
| T |
6521773 |
ttcatcgttgtaccatccaattgcttcttttcggttttgacaatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattgagtttg |
6521674 |
T |
|
| Q |
619 |
acatctcctctacacagtccaatagcgtttactttgtcggtgtt |
662 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||| ||||| |
|
|
| T |
6521673 |
acatctcctctacatagtccaatcgcgtttactttgtcagtgtt |
6521630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 95 - 665
Target Start/End: Original strand, 6512451 - 6513009
Alignment:
| Q |
95 |
atgatgaaggtgaatcttgtgtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtctaagaaatctaccacctatacccattct |
194 |
Q |
| |
|
||||||| |||| |||| |||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||| || |||| |||| || || |
|
|
| T |
6512451 |
atgatgagggtggatctggtgtttgttgatagaagagtgaatcggtttcatatctcaaataacaacttggtctaacaattctagcacc------caacct |
6512544 |
T |
|
| Q |
195 |
attgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatcaggtgtgcattgaacaagagcaaatatg |
294 |
Q |
| |
|
|||| |||||| |||||||| ||||||||||||| ||||||| ||||| ||||||| || ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6512545 |
gttgttacaacatcttgggattgctttgatagattttaccaaacaatcatcgcacaatgatttagacaaatcaggtgtgcattgaacaagagcatatata |
6512644 |
T |
|
| Q |
295 |
gtttgattattatttggaccaatcacatcatttcctacagcatatttaaggtcactttcccccgatgcagctatattttttaaattatacaacaaatttt |
394 |
Q |
| |
|
||||||||||||||| |||||| | ||||| |||| |||||||||||||||||||| || || |||| |||| ||||| ||||||||| ||| ||||||| |
|
|
| T |
6512645 |
gtttgattattattttgaccaacctcatcacttccaacagcatatttaaggtcactatcacctgatgaagctctatttcttaaattatccaataaatttt |
6512744 |
T |
|
| Q |
395 |
tcagccctttatcaaattcatcttcgacttcctttgttgcgttctgcaaattccatgcaatcatggcaggtcccatttcattgataccaaatattgaacg |
494 |
Q |
| |
|
|||| ||||||||||||||| |||| ||||| || || | |||| ||||| | | ||||| ||||||| | ||| ||||||||||| |
|
|
| T |
6512745 |
tcagtactttatcaaattcat------cttcatttgtagcattgttcaaactccatcctaaataaaaaggtctagtttcattcagaccgaatattgaacg |
6512838 |
T |
|
| Q |
495 |
gtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgacaaagttgtgttagaagggcagttgaattttggagg |
594 |
Q |
| |
|
|| |||| |||||||||||||| | || || || ||||| ||||| || ||||||||||||||||||||||||||||||| | ||| |||||| | | | |
|
|
| T |
6512839 |
gtatgagtaacgcaacatgcatgtatcttcatcataccaaccaatagcctcttttcgattttgacaaagttgtgttagaaagacagatgaattctttatg |
6512938 |
T |
|
| Q |
595 |
caattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttat |
665 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
6512939 |
caattttgacaatcattgggtttgacatctcctctacaaagtccaatagcgtttactttgtcggtgtttat |
6513009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 100 - 666
Target Start/End: Original strand, 6516855 - 6517409
Alignment:
| Q |
100 |
gaaggtgaatcttgtgtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtctaagaaatctaccacctatacccattctattgt |
199 |
Q |
| |
|
|||||||||||||||||| ||||||| || ||||||| |||||||||||||||||||||||||||||||| || |||| ||| ||| || |||| |
|
|
| T |
6516855 |
gaaggtgaatcttgtgttggttgataaaagagtgaatcggtttcatatctcaaataacaactgggtctaacaactctagcact------catcctgttgt |
6516948 |
T |
|
| Q |
200 |
cacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatcaggtgtgcattgaacaagagcaaatatggtttg |
299 |
Q |
| |
|
|||||| ||| |||||| |||||||||| | ||||||| |||||||| ||||||| | |||||||||||||||||||| | ||| || |||||||||| |
|
|
| T |
6516949 |
tacaacatattgcgatttcattgatagattgaaccaaacaatcatcacaaaatgttttaaacaaatcaggtgtgcattgagctagaccatatatggtttg |
6517048 |
T |
|
| Q |
300 |
attattatttggaccaatcacatcatttcctacagcatatttaaggtcactttcccccgatgcagctatattttttaaattatacaacaaatttttcagc |
399 |
Q |
| |
|
||||||||||||||||| | ||||| ||||||||||||||||||||||||| ||||| ||||||||| ||||| ||||||||| ||||||||||||| || |
|
|
| T |
6517049 |
attattatttggaccaacctcatcacttcctacagcatatttaaggtcactgtcccctgatgcagctctatttcttaaattatccaacaaatttttccgc |
6517148 |
T |
|
| Q |
400 |
cctttatcaaattcatcttcgacttcctttgttgcgttctgcaaattccatgcaatcat-ggcaggtcccatttcattgataccaaatattgaacggtgt |
498 |
Q |
| |
|
||||||||||||||| |||| ||| | || ||| |||| ||||||| |||| ||||| | |||| || |||||||||||||||| | |
|
|
| T |
6517149 |
actttatcaaattcat------cttcatttatcgccgtcttcaaactccatgc-ttcataataaggtctagtgtcatagagaccaaatattgaacggctt |
6517241 |
T |
|
| Q |
499 |
gaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgacaaagttgtgttagaagggcagttgaattttggaggcaat |
598 |
Q |
| |
|
||| |||||||||||||| | ||||| |||||||| |||||||||| ||||| |||||||||| |||||||||||| |||||||||||||||| |||| |
|
|
| T |
6517242 |
gagtaacgcaacatgcatctatcatcatcgtaccaaccaattgcttgttttctattttgacaacgttgtgttagaaacacagttgaattttggagacaat |
6517341 |
T |
|
| Q |
599 |
tttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttatg |
666 |
Q |
| |
|
|| ||||||||| ||||| | ||||||||| || |||||||| ||||||||||||||| |||||||| |
|
|
| T |
6517342 |
ttcgacaatcattcggttttaaatctcctctgcatagtccaattgcgtttactttgtcgctgtttatg |
6517409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 460 - 569
Target Start/End: Complemental strand, 47778150 - 47778041
Alignment:
| Q |
460 |
gcaggtcccatttcattgataccaaatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgac |
559 |
Q |
| |
|
|||||||| |||||||||| | |||||||||||||| |||| |||||||||||||||||||||| |||||||| ||||||||||| ||| ||| ||| |
|
|
| T |
47778150 |
gcaggtccaatttcattgaggctaaatattgaacggtctgagtaacgcaacatgcatttttcatcctcgtaccaaccaattgcttcctttttgtttggac |
47778051 |
T |
|
| Q |
560 |
aaagttgtgt |
569 |
Q |
| |
|
|||||||||| |
|
|
| T |
47778050 |
aaagttgtgt |
47778041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 6506475 - 6506529
Alignment:
| Q |
2 |
gaggaggagcagagaatgatggcactgatgttggggaaggtgttggtgatggtga |
56 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
6506475 |
gaggaggagctgagaatgatggcactgatgctggtgaaggtgttggtgatggtga |
6506529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 484 - 569
Target Start/End: Complemental strand, 6523810 - 6523725
Alignment:
| Q |
484 |
aatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgacaaagttgtgt |
569 |
Q |
| |
|
||||| ||||||| ||| |||||||||||||||||||||| || ||||| ||||||||||||||| | ||| ||||||| ||||| |
|
|
| T |
6523810 |
aatatggaacggtctgaataacgcaacatgcatttttcatcttcataccaaccaattgcttctttttggtttggacaaagctgtgt |
6523725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 484 - 663
Target Start/End: Original strand, 47760133 - 47760306
Alignment:
| Q |
484 |
aatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgacaaagttgtgttagaagggcagttg |
583 |
Q |
| |
|
|||||||| |||| |||| ||||||||||||| || |||| |||| ||||||||||||||| | ||| ||||||||| ||| ||||| | ||| |
|
|
| T |
47760133 |
aatattgatcggtttgagtaacgcaacatgcagttatcat------accaaccaattgcttctttttggtttggacaaagttttgtgagaagaactcttg |
47760226 |
T |
|
| Q |
584 |
aattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgttt |
663 |
Q |
| |
|
||| | ||| ||| | | ||| | |||||||| |||||||||||||| |||||||| |||||||||||||| |||||| |
|
|
| T |
47760227 |
aatcgttgagacaactgcggcaaacgtcgggtttaacatctcctctacagagtccaatggcgtttactttgtcagtgttt |
47760306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 484 - 549
Target Start/End: Complemental strand, 47782034 - 47781969
Alignment:
| Q |
484 |
aatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttctttt |
549 |
Q |
| |
|
||||| ||||||| ||| |||| ||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
47782034 |
aatatagaacggtctgaataacgtaacatgcatttctcatcctcgtaccatccaattgcttctttt |
47781969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 460 - 549
Target Start/End: Complemental strand, 47788272 - 47788183
Alignment:
| Q |
460 |
gcaggtcccatttcattgataccaaatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttctttt |
549 |
Q |
| |
|
|||||||| ||||| || | ||| | ||||||||||| ||| |||| ||||| ||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
47788272 |
gcaggtccaatttcgtttagacccattattgaacggtctgaataacgtaacatacatttctcatcctcgtaccatccaattgcttctttt |
47788183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 608 - 663
Target Start/End: Original strand, 47713336 - 47713391
Alignment:
| Q |
608 |
catcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgttt |
663 |
Q |
| |
|
|||| ||||| ||||||||||| || |||||||| ||||||||||||||||||||| |
|
|
| T |
47713336 |
catcaggtttaacatctcctctgcagagtccaatggcgtttactttgtcggtgttt |
47713391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 610 - 663
Target Start/End: Original strand, 47745921 - 47745974
Alignment:
| Q |
610 |
tcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgttt |
663 |
Q |
| |
|
|||||||| ||||||||||| || |||||||| ||||||||||| || |||||| |
|
|
| T |
47745921 |
tcgggtttaacatctcctctgcagagtccaatggcgtttactttatcagtgttt |
47745974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 300
Target Start/End: Original strand, 47759914 - 47759955
Alignment:
| Q |
259 |
gacaaatcaggtgtgcattgaacaagagcaaatatggtttga |
300 |
Q |
| |
|
||||||||||||||||| ||||||||| || ||||||||||| |
|
|
| T |
47759914 |
gacaaatcaggtgtgcactgaacaagaccatatatggtttga |
47759955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 5e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 508 - 653
Target Start/End: Complemental strand, 722305 - 722161
Alignment:
| Q |
508 |
aacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgacaaagttgtgttagaagggcagttgaattttggaggcaattttgacaat |
607 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||| |||| || |||||||||||||| || |||||| || | ||||| ||||||||| |
|
|
| T |
722305 |
aacatgcatttttcatcatcgtacaatccaattgcttcttttcggttttataaatgttgtgttagaaggacaattgaatatttgtggcaa-tttgacaat |
722207 |
T |
|
| Q |
608 |
catcgggtttgacatctcctctacacagtccaatagcgtttacttt |
653 |
Q |
| |
|
||| | | || |||||||||||||| ||||||| |||||||||| |
|
|
| T |
722206 |
cattgagcttaacatctcctctacatagtccaaccacgtttacttt |
722161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 633 - 666
Target Start/End: Complemental strand, 704425 - 704392
Alignment:
| Q |
633 |
cagtccaatagcgtttactttgtcggtgtttatg |
666 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |
|
|
| T |
704425 |
cagtccaatagcgtttactttgtcagtgtttatg |
704392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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