View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13185_low_2 (Length: 608)
Name: NF13185_low_2
Description: NF13185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13185_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 193 - 591
Target Start/End: Complemental strand, 8987236 - 8986838
Alignment:
| Q |
193 |
tctccaaaggtctcttctctcgtctgtcctttgtgggaatttggtgtccgatcgtttatccttaatttgatcgtcgtgttt-actctctaaatctccctc |
291 |
Q |
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| T |
8987236 |
tctccaaaggtctcttctctcgtctgtcctttgtgggaatttggtgtccgatcgtttatccttaatctgatcgcagtgttttaatctctaaacttctctc |
8987137 |
T |
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| Q |
292 |
ttgaatctttgtttttaataattccgtgattgtcctcataatatcaatccagaatcacttttgatttcctgttttgttcccaattatcaccagatctgat |
391 |
Q |
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| T |
8987136 |
tcgaatctgtgtctctaagattttcgtgattgtcctcataatatcaatccagaattt-tgttgatttcctgttttgttcccaattattaccagatctgaa |
8987038 |
T |
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| Q |
392 |
tcatgaattgtgtggtcaaaattatgcaattaatattcctattgtccatggttgtaactgttcagataacaaagtcaacagatctgatatctttgtatct |
491 |
Q |
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| T |
8987037 |
tcatgaattgtgtggtcaaaattatacaattaatattcatattgtccatggtagtaactgttcagattacaaagtcaacagatctgatatctctgtatct |
8986938 |
T |
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| Q |
492 |
tggcctttatggtatccataacatcttattaagtatgcatatttcaactttattcatgaagatttggttacccttttcttctttctgtcacgaggcttat |
591 |
Q |
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| T |
8986937 |
tggcctttatggtatccataacatcttattaagtatgaatacttcaactttattcatgaagatttggttacccttttcttccttctgtcacgagtcttat |
8986838 |
T |
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Target: chr4 (Bit Score: 83; Significance: 5e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 62 - 152
Target Start/End: Original strand, 8495874 - 8495964
Alignment:
| Q |
62 |
tataaatttgagaatgaggtaaaccgtgttggtgtctcaatttgagaattcagaaccatatataaatgatatacatacactttgcacattt |
152 |
Q |
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| T |
8495874 |
tataaatttgagaatgagttaaaccgtgttgatgtctcaatttgagaattcagaaccatatataaatgatatacatacactttgcacattt |
8495964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 47209555 - 47209613
Alignment:
| Q |
1 |
gaagaaattgaacagggttatggtgtgaggaaagaagaagaacaaggttacggtttatg |
59 |
Q |
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| T |
47209555 |
gaagaaattgaacagggttatggtgtgaggaaagaagaagaacaaggttatggtttatg |
47209613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 461 - 560
Target Start/End: Original strand, 21692729 - 21692828
Alignment:
| Q |
461 |
caaagtcaacagatctgatatctttgtatcttggcctttatggtatccataacatcttattaagtatgcatatttcaactttattcatgaagatttggtt |
560 |
Q |
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| T |
21692729 |
caaagtcaacagatctgatatccctgtatcttggtctttatggtattcataatattttattgaatatgaatatctttactttactgatgaagattcggtt |
21692828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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