View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13185_low_4 (Length: 250)
Name: NF13185_low_4
Description: NF13185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13185_low_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 2115114 - 2115351
Alignment:
| Q |
13 |
aatatcggaatcaagttcttcttttgagcaaagaatctcacctcttccatgcttaaacggttgaggaaacttgaacttgtgacgatcaccaaaccaaacg |
112 |
Q |
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| T |
2115114 |
aatatcggaatcaagttcttcttttgagcaaagaatctcacctcttccatgcttaaacggttgaggaaacttgaacttgtgacgatcaccaaaccaaacg |
2115213 |
T |
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| Q |
113 |
cgaccgagcaaatgactctatcagcaatttcatggctttgaatatctgaatactttgatctatcagcaagtaaacaatcaatgccttgaagctcaagctc |
212 |
Q |
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| T |
2115214 |
cgaccgagcaaatgactctatcagcaatttcatggctttgaatatctgaatactttgatctatcagcaagcaaacaatcaatgccttgaagctcaagctc |
2115313 |
T |
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| Q |
213 |
agatttaagccacttgcagaagcgaataagattcggat |
250 |
Q |
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| T |
2115314 |
agatttaagccacttgcagaagcgaataagactcggat |
2115351 |
T |
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