View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13186_high_12 (Length: 380)
Name: NF13186_high_12
Description: NF13186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13186_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 133; Significance: 5e-69; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 35 - 274
Target Start/End: Original strand, 11647883 - 11648120
Alignment:
| Q |
35 |
aaagatttatgttgagacttcaatataaccagaagcaaagtacacaacaaaccaaaacaaactaatgttaacaaagagaaacaaattagtgagttagtat |
134 |
Q |
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| T |
11647883 |
aaagatttatgttgagacttcaatataaccaaaagcaaagtacacaacaaagcaaaacaaactaatgttaataaaga--accaaattagtgagtaagcat |
11647980 |
T |
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| Q |
135 |
aatcaattaacgaaaaacaactaaatgcatcccaatgtaatttcaattgacttattcactttctaaagatcccttttgagaaatcatgattaattgaatg |
234 |
Q |
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| T |
11647981 |
aattaattaaccaaaagcatatgaatgcaactcactttaattacatttgacttattcactttataaatctaccttttgagaaatcatgattaattgaatg |
11648080 |
T |
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| Q |
235 |
aatatatttgtaaaaacgcttcaattcattatagtaaact |
274 |
Q |
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| T |
11648081 |
aatatatttgtaaaaacatttcaattcattatagtaaact |
11648120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 279 - 377
Target Start/End: Original strand, 45637739 - 45637837
Alignment:
| Q |
279 |
gctagggtgtgcaatagggtagtcaagactacttaccataaacttaatgcattctgaatcattagaaaattattttgcaatgagctgaagtattcaaat |
377 |
Q |
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| T |
45637739 |
gctagggtgtgcaatggggtagtcaagactacttaacataaactttatgcattccgaatcattagaaaattattttgcaatgaaatgaagcattcaaat |
45637837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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