View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13186_high_13 (Length: 370)
Name: NF13186_high_13
Description: NF13186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13186_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 16992777 - 16993138
Alignment:
| Q |
1 |
actttcaccatactcatctgaatttatcgaaatcaggttatcttgtgccccacacttttcatcaacaaactttccatctttagcatcaaaatcaccactt |
100 |
Q |
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| T |
16992777 |
actttcaccatactcatctgaatttatcgaaatcaggttatcttgtgccccacacttttcatcaacaaactttccatctttagcatcaaaatcac---tt |
16992873 |
T |
|
| Q |
101 |
cctccactttcaccaccaccctcagacatcttctcatcactatgttccaacccttcttcaccaacatcttcatattcatcatcatcgatggaaattacct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16992874 |
cctccactttcaccaccaccctcagacatcttctcatcactatgttccaacccttcttcaccaacatcttcatattcatcatcatcgatggaaattacct |
16992973 |
T |
|
| Q |
201 |
cggcatctgcaggaacaacaaaaggttcttcagtcatctttcnnnnnnnagaaccagaaacatattccaaacccttatcttcttcatcactctttctccg |
300 |
Q |
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| T |
16992974 |
cggcatctgcaggaacaacaaaaggttcttcagtcatctttctttttttagaaccagaaacatattccaaacccttatcttcttcatcactctttctccg |
16993073 |
T |
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| Q |
301 |
ctttgatgacccaccaagtaaaagagaaccaaacaacggaacattcttgccacaggttctgctcg |
365 |
Q |
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| T |
16993074 |
ctttgatgacccaccaagtaaaagagaaccaaacaacggaacattcttgctacgagttctgctcg |
16993138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 316
Target Start/End: Complemental strand, 10600871 - 10600805
Alignment:
| Q |
250 |
agaaccagaaacatattccaaacccttatcttcttcatcactctttctccgctttgatgacccacca |
316 |
Q |
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| T |
10600871 |
agaaccagaaagagagtcaaaactcatatcatcttcatcactctttctccgctttgatgaaccacca |
10600805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 90
Target Start/End: Complemental strand, 10601293 - 10601253
Alignment:
| Q |
50 |
ccacacttttcatcaacaaactttccatctttagcatcaaa |
90 |
Q |
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| T |
10601293 |
ccacacttttcgtcaacaaactttccatctttcgcatcaaa |
10601253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 16969214 - 16969275
Alignment:
| Q |
171 |
catattcatcatcatcgatggaaattacctcggcatctgcaggaacaacaaaaggttcttca |
232 |
Q |
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|||| ||||||| || ||||||||||||| |||| || ||||||| ||||||||||||||| |
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| T |
16969214 |
cataatcatcatgttcaatggaaattaccttggcaccttcaggaaccacaaaaggttcttca |
16969275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 124 - 363
Target Start/End: Complemental strand, 35262418 - 35262179
Alignment:
| Q |
124 |
agacatcttctcatcactatgttccaacccttcttcaccaacatcttcatattcatcatcatcgatggaaattacctcggcatctgcaggaacaacaaaa |
223 |
Q |
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||||||||| ||||||||||| || | ||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
35262418 |
agacatcttgtcatcactatgctctgaaccttcttgaccaacatcttcatattcatcatcatcgatggaaactacctcagcatctgcaggaacaacaaaa |
35262319 |
T |
|
| Q |
224 |
ggttcttcagtcatctttcnnnnnnnagaaccagaaacatattccaaacccttatcttcttcatcactctttctccgctttgatgacccaccaagtaaaa |
323 |
Q |
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|||||||| ||||||| | ||||| ||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
35262318 |
ggttcttcgttcatcttcctttttttagaacgagaaacatagtccaaccccttatcttcttcatcactctttctccgttttgatgaaccaccaagtaaaa |
35262219 |
T |
|
| Q |
324 |
gagaaccaaacaacggaacattcttgccacaggttctgct |
363 |
Q |
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||||||||||||||||||||||||||| || |||||||| |
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| T |
35262218 |
gagaaccaaacaacggaacattcttgctacgagttctgct |
35262179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 35262502 - 35262417
Alignment:
| Q |
1 |
actttcaccatactcatctgaatttatcgaaatcaggttatcttgtgccc---cacacttttcatcaacaaactttccatctttag |
83 |
Q |
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|||||||||||||||||||||| ||||||||| | ||||||||||| ||| |||| |||||||||||||||||||||||||||| |
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| T |
35262502 |
actttcaccatactcatctgaacttatcgaaaccgggttatcttgttccctctcacaattttcatcaacaaactttccatctttag |
35262417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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