View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13186_high_14 (Length: 341)
Name: NF13186_high_14
Description: NF13186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13186_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 9 - 324
Target Start/End: Complemental strand, 34956190 - 34955875
Alignment:
| Q |
9 |
gagatgaatatcctaagcacttcatgccaaaaacttgtgtgtctaagcaaatcaatatatatctcagcagcatgtttatatcgattcatcctcctaagat |
108 |
Q |
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| T |
34956190 |
gagatgaatatcctaagcacttcatgccaaaaacttgtgtgtctaagcaaatcaatatatatctcagcagcatgtttatatcgattcatcctcctaagat |
34956091 |
T |
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| Q |
109 |
caaacccactatgtgttcaaattgtatatttcatatccatttcaactttgggttttggatttctcaaagctcttaaacccttaggtcaaacacnnnnnnn |
208 |
Q |
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| T |
34956090 |
caaacccactatgtgttcaaattgtatatttcatatccatttcaactttgggttttggatttctcaaagctctaaaacccttaggtcaaacacaaaaaaa |
34955991 |
T |
|
| Q |
209 |
tttagatttgttcttcacatccgtttcatccaccacagtttcaagcatggtcacggttgaaatggaaattttttctaacactcaattaatcatcattacc |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
34955990 |
tttagatttgttcttcacatccgtttcatccaccacagtttcaagcatggtcacggttgaaatgggaattttttctaacactcaattaatcatcattacc |
34955891 |
T |
|
| Q |
309 |
atcttaatgttcatag |
324 |
Q |
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|||||||||||||||| |
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| T |
34955890 |
atcttaatgttcatag |
34955875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 56 - 324
Target Start/End: Complemental strand, 34974605 - 34974337
Alignment:
| Q |
56 |
caaatcaatatatatctcagcagcatgtttatatcgattcatcctcctaagatcaaacccactatgtgttcaaattgtatatttcatatccatttcaact |
155 |
Q |
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| T |
34974605 |
caaatcaatttttttcttagcagcatgtttttgtcgcttcatcctcctaagagcaaacccattatgggttcaaattgtatatttcacatctctttcaact |
34974506 |
T |
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| Q |
156 |
ttgggttttggatttctcaaagctcttaaacccttaggtcaaacacnnnnnnntttagatttgttcttcacatccgtttcatccaccacagtttcaagca |
255 |
Q |
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|||||||||||||||||||||| ||| ||||| |||||| |||||| |||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
34974505 |
ttgggttttggatttctcaaagttctaaaacctttaggtgaaacacctaaaaatttagatttgttcttcacatccatttcagccaccacagtttcaagca |
34974406 |
T |
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| Q |
256 |
tggtcacggttgaaatggaaattttttctaacactcaattaatcatcattaccatcttaatgttcatag |
324 |
Q |
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|| ||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
34974405 |
tgtccacggttgaaatgcaaaatttttctaaccctcaattaatcatcattaccatcttaatgttcatag |
34974337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 80 - 324
Target Start/End: Complemental strand, 35035308 - 35035061
Alignment:
| Q |
80 |
atgtttatatcgattcatcctcctaagatcaaacccactatgtgttcaaattgtatatttcatatccatttcaactttgggttttggatttctcaaagct |
179 |
Q |
| |
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|||||| ||||| ||||||||||||||| |||| ||| |||||||||||||| |||||||||| || ||||| ||| || |||||||||||||||||| |
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| T |
35035308 |
atgtttttatcgcttcatcctcctaagagcaaatccattatgtgttcaaattctatatttcatctctatttccttttttgggtttggatttctcaaagct |
35035209 |
T |
|
| Q |
180 |
cttaaacccttaggtcaaaca---cnnnnnnntttagatttgttcttcacatccgtttcatccaccacagtttcaagcatggtcacggttgaaatggaaa |
276 |
Q |
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|| || || ||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35035208 |
ctaaaccctttatatcaaacatcacctaaaaacttagatttgttcttcacatccgtttcatccaccacagtttcaagcatgtccacggttgaaatggaat |
35035109 |
T |
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| Q |
277 |
ttttttctaacactcaattaatcatcattaccatcttaatgttcatag |
324 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
35035108 |
ttttttctaaccctcaattaatcatcattaccatcttaatgttcatag |
35035061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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