View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13186_high_15 (Length: 336)
Name: NF13186_high_15
Description: NF13186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13186_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 16992798 - 16992483
Alignment:
| Q |
1 |
ttcagatgagtatggtgaaagtgaagaacactctgttgattctgatgctgataatgaagaagaagnnnnnnnnnnnnnnnnnnnngcagatgatgttgtt |
100 |
Q |
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| T |
16992798 |
ttcagatgagtatggtgaaagtgaagaacactctgttgattctgatcctgataacgaagaagaagaaaaagaaaaagaaaaa---gcagatgatgttgtt |
16992702 |
T |
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| Q |
101 |
aaaagtgatgaaagtggtggaattggtaggttttctgatcaaggtgaaaaggttataattgatttggatgattctgaagagagtgaggaggatgattcgg |
200 |
Q |
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| T |
16992701 |
aaaagtgatgaaagtgggggaattggtaggttttctgatcaaggtgaaaaggttataattgatttggatgattctgaagagagtaaggaggatgattcgg |
16992602 |
T |
|
| Q |
201 |
atgagagtgaagcaaatgattctagtgatgaagattttgaagttgatgagccgaatgagatttcagacaatgatgacgatgactgttcttcaagctcctc |
300 |
Q |
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| T |
16992601 |
ataagagtgaagcaaatgattctagtgatgaagattttgaagttgatgagccgaatgagatttcagacaatgatgacgatgactgttcttcaagctcctc |
16992502 |
T |
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| Q |
301 |
ttatgttaatgatgatgat |
319 |
Q |
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| T |
16992501 |
ttatgttaatgatgatgat |
16992483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 193 - 280
Target Start/End: Original strand, 10601660 - 10601747
Alignment:
| Q |
193 |
tgattcggatgagagtgaagcaaatgattctagtgatgaagattttgaagttgatgagccgaatgagatttcagacaatgatgacgat |
280 |
Q |
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| T |
10601660 |
tgattctgatgaaagtgaagaaaatgagactagcgatgaggattttagagttgatgagctgaatgagatttctgacaatgatgacgat |
10601747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 217 - 276
Target Start/End: Complemental strand, 17008185 - 17008126
Alignment:
| Q |
217 |
tgattctagtgatgaagattttgaagttgatgagccgaatgagatttcagacaatgatga |
276 |
Q |
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| T |
17008185 |
tgattctagtgatgaagattttaaagttgaggagctgaatgagatttctgacaatgatga |
17008126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 101 - 319
Target Start/End: Original strand, 35262596 - 35262817
Alignment:
| Q |
101 |
aaaagtgatgaaagtggtggaattggtaggttttctgatcaaggtgaaaaggttataattgatttggatgattctgaagagagtgagg---aggatgatt |
197 |
Q |
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| T |
35262596 |
aaaagtgatgaaagtgggggaattggtaggttttctgataaaggtgaaaaggttataattgatttggatgattctgaagagagtgaggaggaggatgatt |
35262695 |
T |
|
| Q |
198 |
cggatgagagtgaagcaaatgattctagtgatgaagattttgaagttgatgagccgaatgagatttcagacaatgatgacgatgactgttcttcaagctc |
297 |
Q |
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| ||||||||||||| |||||| ||||||||||||||||||| ||||||||| | |||||| |||||||||||| |||| |||||| ||||||| ||||| |
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| T |
35262696 |
ctgatgagagtgaagaaaatgactctagtgatgaagattttgcagttgatgaactgaatgaaatttcagacaatcatgatgatgacagttcttctagctc |
35262795 |
T |
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| Q |
298 |
ctcttatgttaatgatgatgat |
319 |
Q |
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|||||||||| ||||||||||| |
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| T |
35262796 |
ctcttatgttgatgatgatgat |
35262817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 35262481 - 35262548
Alignment:
| Q |
1 |
ttcagatgagtatggtgaaagtga---agaacactctgttgattctgatgctgataatgaagaagaag |
65 |
Q |
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|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
35262481 |
ttcagatgagtatggtgaaagtgatgaagaacactttgttgattctgatgctgataatgaagaagaag |
35262548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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