View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13186_high_19 (Length: 276)
Name: NF13186_high_19
Description: NF13186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13186_high_19 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 268
Target Start/End: Complemental strand, 10036164 - 10035915
Alignment:
| Q |
19 |
aatgggatcgcgacaacagcaagaaattggtcatgctgcagctgtcacgcacccaccagcttctgttcaggagaaaatgcttgtaccagatcctatagag |
118 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10036164 |
aatgggattgcgacaacagcaagaaattggtcatgctgcagctgtcacgcacccaccagctgctgttcaggagaaaatgcttgtaccagatcctatagag |
10036065 |
T |
|
| Q |
119 |
ttgatacgatggcagatacctcttcctggtcgagttaaatgcaacattgatgcctcattttcgcctgtgcagaaccgtacctgtatcagaatttgcctac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10036064 |
ttgatacgatggcagatacctcttcctggtcgagttaaatgcaacattgatgcctcattttcgcctgtgcagaaccgtacctgtatcagaatttgcctac |
10035965 |
T |
|
| Q |
219 |
gtgataaggaaggcgcctatatgctagcgaaaaccatgagcttctcacct |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10035964 |
gtgataaggaaggcgcctatatgctagcgaaaaccatgagcttctcacct |
10035915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 10096544 - 10096283
Alignment:
| Q |
18 |
gaatgggatcgcgacaacagcaagaaattggtcatgctgcagctgtcacgcacccaccagcttctgttcaggagaaaatgcttgtaccagatcctataga |
117 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10096544 |
gaatgggattgcgacaacaacaagaaattggtcatgctgcagctgtcacgcacccactagctgctgttcaggagaaaatgcttgtaccagatcctataga |
10096445 |
T |
|
| Q |
118 |
gttgatacgatggcagatacctcttcctggtcgagttaaatgcaacattgatgcctcattttc-----------gcctgtgcagaaccgtacctgtatca |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||| |
|
|
| T |
10096444 |
gttgatacgatggcagatacctcttcctggtcgagttaaatgcaacattgatgcctcattttcgcctcattttcgcctgtgcagaacggtacctgtttca |
10096345 |
T |
|
| Q |
207 |
gaatttgcctacgtgataaggaaggcgcctatatgctagcgaaaaccatgagcttctcacct |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10096344 |
gaatttgcctacgtgataaggaaggcgcctatatgctagcgaaaaccatgagcttctcacct |
10096283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University