View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13186_high_2 (Length: 724)

Name: NF13186_high_2
Description: NF13186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13186_high_2
NF13186_high_2
[»] chr4 (8 HSPs)
chr4 (21-379)||(6936900-6937251)
chr4 (517-707)||(6937405-6937595)
chr4 (213-349)||(435338-435474)
chr4 (228-349)||(23907342-23907463)
chr4 (228-331)||(1778075-1778178)
chr4 (258-349)||(39707615-39707706)
chr4 (391-463)||(6937278-6937350)
chr4 (261-347)||(29822295-29822381)
[»] chr8 (3 HSPs)
chr8 (244-349)||(25984687-25984792)
chr8 (213-349)||(36544258-36544393)
chr8 (309-349)||(42855053-42855093)
[»] chr1 (5 HSPs)
chr1 (235-349)||(29173569-29173683)
chr1 (213-349)||(43241421-43241557)
chr1 (228-349)||(8671039-8671160)
chr1 (213-331)||(49348460-49348578)
chr1 (213-349)||(51441804-51441940)
[»] chr7 (3 HSPs)
chr7 (213-349)||(22346618-22346754)
chr7 (213-349)||(33350846-33350982)
chr7 (249-349)||(36651136-36651236)
[»] chr2 (3 HSPs)
chr2 (213-349)||(45368666-45368802)
chr2 (213-349)||(452656-452792)
chr2 (213-349)||(8179899-8180035)
[»] scaffold0606 (1 HSPs)
scaffold0606 (235-349)||(8819-8933)
[»] chr6 (4 HSPs)
chr6 (235-331)||(17222676-17222769)
chr6 (228-349)||(6082521-6082642)
chr6 (228-349)||(20428677-20428798)
chr6 (235-288)||(30670022-30670075)
[»] chr5 (6 HSPs)
chr5 (211-345)||(17212372-17212506)
chr5 (308-345)||(31503091-31503128)
chr5 (213-349)||(2076514-2076650)
chr5 (249-349)||(24177666-24177766)
chr5 (249-335)||(27100-27186)
chr5 (228-286)||(34734706-34734764)
[»] chr3 (2 HSPs)
chr3 (228-343)||(50630365-50630480)
chr3 (233-349)||(51448749-51448865)
[»] scaffold0018 (1 HSPs)
scaffold0018 (213-349)||(30574-30710)


Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 21 - 379
Target Start/End: Original strand, 6936900 - 6937251
Alignment:
Q  21 taatggcaattaactattattcactactaaacggtagttgattatcgttttcttatgaacggtagttaattgtccttatgttgttacatatacggaaaca 120  Q
    |||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  6936900 taatggcaattaactattattcatggctaaacggtagttgattatcgttttcttatgaacggtagttaattgtcgttatgttgttacatatactgaaaca 6936999  T
Q  121 taaactaatcaaa-cattcactttcaaactcaaccaaatataaaccatacattttctctctctactctaacaaatcaaaccctagaaaagaaaaaccaat 219  Q
    ||||||||||||| ||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6937000 taaactaatcaaaacattcactttcaaactcaacca--------ccatacattttctctctctactctaacaaatcaaaccctagaaaagaaaaaccaat 6937091  T
Q  220 tttgattaatgcttgggaggttgacaatagaagcaatatacttactacgacgtgtgatggagcaatatccaatggttcaaaaggagtcgcacttagtttt 319  Q
    ||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||| ||||||| ||||    
T  6937092 tttgattaatgcttgggaggtcgacaagagaagcaatagacttactacgacgtgtgatggagcaatatccaatgtatcaaaaggagttgcacttaatttt 6937191  T
Q  320 tattgatttggagaagacatatgatagagtccattatttgattcataagttggagaaaga 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6937192 tattgatttggagaagacatatgatagagtccattatttgattcataagttggataaaga 6937251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 517 - 707
Target Start/End: Original strand, 6937405 - 6937595
Alignment:
Q  517 cacgttattacctaccttcaccgcattatataatataaaaaacaagagtttaacctgcaagaacataaataagtttgtattatatgaatataatacatat 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6937405 cacgttattacctaccttcaccgcattatataatataaaaaacaagagtttaacctgcaagaacataaataagtttgtattatatgaatataatacatat 6937504  T
Q  617 tatttgattgatcctaatctattgcaaaatagagtctaattactctactttattacataaagggatattgtctttcatcacataatgatgg 707  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6937505 tatttgattgatcctaatctattgcaaaatagagtctaattactctactttattacataaagggatattgtctttcatcacataatgatgg 6937595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 213 - 349
Target Start/End: Original strand, 435338 - 435474
Alignment:
Q  213 aaccaattttgattaatgcttgggaggttgacaatagaagcaatatacttactacgacgtgtgatggagcaatatccaatggttcaaaaggagtcgcact 312  Q
    ||||||||| | || |||| |||||||||||| || |||||||| |||||||| ||||| ||||| |||| |||||  | || | |||| || | |||||    
T  435338 aaccaatttggttttatgcctgggaggttgactatggaagcaatctacttacttcgacgcgtgatagagcgatatcggacggataaaaaagacttgcact 435437  T
Q  313 tagtttttattgatttggagaagacatatgatagagt 349  Q
    ||||||| ||||||||||| ||||| |||||||||||    
T  435438 tagttttcattgatttggaaaagacgtatgatagagt 435474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 228 - 349
Target Start/End: Complemental strand, 23907463 - 23907342
Alignment:
Q  228 atgcttgggaggttgacaatagaagcaatatacttactacgacgtgtgatggagcaatatccaatggttcaaaaggagtcgcacttagtttttattgatt 327  Q
    |||| |||||||| ||| || |||||||| |||||||| ||||| |||||||||| ||||| || || | |||| || | |||||||||||| |||||||    
T  23907463 atgcctgggaggtcgactatggaagcaatctacttacttcgacgcgtgatggagcgatatcgaacggataaaaaagacttgcacttagttttcattgatt 23907364  T
Q  328 tggagaagacatatgatagagt 349  Q
    |||| ||| | |||||||||||    
T  23907363 tggaaaaggcgtatgatagagt 23907342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 228 - 331
Target Start/End: Complemental strand, 1778178 - 1778075
Alignment:
Q  228 atgcttgggaggttgacaatagaagcaatatacttactacgacgtgtgatggagcaatatccaatggttcaaaaggagtcgcacttagtttttattgatt 327  Q
    |||| |||||||||||| || |||||||| |||||||| |||||||||||||||| |||||  | || | ||||  | | |||||||||||| |||||||    
T  1778178 atgcctgggaggttgactatggaagcaatctacttacttcgacgtgtgatggagcgatatcggacggataaaaaaaacttgcacttagttttcattgatt 1778079  T
Q  328 tgga 331  Q
    ||||    
T  1778078 tgga 1778075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 258 - 349
Target Start/End: Original strand, 39707615 - 39707706
Alignment:
Q  258 tacttactacgacgtgtgatggagcaatatccaatggttcaaaaggagtcgcacttagtttttattgatttggagaagacatatgatagagt 349  Q
    |||||||| |||||||||||||||| ||| |  | || | |||| || | |||||||||||| ||||||||||||||||| |||||||||||    
T  39707615 tacttacttcgacgtgtgatggagcgataacagacggataaaaaagacttgcacttagttttcattgatttggagaagacgtatgatagagt 39707706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 391 - 463
Target Start/End: Original strand, 6937278 - 6937350
Alignment:
Q  391 attatttgattcatataatcgaccttatttaatgtgataaaactttgatgttgctgtactaatcttacttaat 463  Q
    ||||||| ||||||||| |||| | |||||||||  ||||||||||||||||| | |||||  ||||||||||    
T  6937278 attattttattcatatagtcgatcatatttaatggaataaaactttgatgttgttatactatccttacttaat 6937350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 261 - 347
Target Start/End: Complemental strand, 29822381 - 29822295
Alignment:
Q  261 ttactacgacgtgtgatggagcaatatccaatggttcaaaaggagtcgcacttagtttttattgatttggagaagacatatgataga 347  Q
    |||||||| | ||||||||||| ||||| ||||| | |||| || |  |||||| ||||||||||| ||| |||||||| |||||||    
T  29822381 ttactacgtcatgtgatggagcgatatcaaatggattaaaaagacttccacttaatttttattgatatggtgaagacatgtgataga 29822295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 244 - 349
Target Start/End: Original strand, 25984687 - 25984792
Alignment:
Q  244 caatagaagcaatatacttactacgacgtgtgatggagcaatatccaatggttcaaaaggagtcgcacttagtttttattgatttggagaagacatatga 343  Q
    |||| ||||||| ||||||||||||||||  ||||||||| |||| ||||| ||||||||| | |||||| ||||  ||||||||||||||| |||||||    
T  25984687 caatggaagcaacatacttactacgacgtaggatggagcagtatcaaatggatcaaaaggacttgcacttggtttccattgatttggagaaggcatatga 25984786  T
Q  344 tagagt 349  Q
    ||||||    
T  25984787 tagagt 25984792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 213 - 349
Target Start/End: Original strand, 36544258 - 36544393
Alignment:
Q  213 aaccaattttgattaatgcttgggaggttgacaatagaagcaatatacttactacgacgtgtgatggagcaatatccaatggttcaaaaggagtcgcact 312  Q
    ||||||||| | || |||| |||||||| ||| || |||||||| |||||||| ||||| ||||| |||| |||||  | || | |||| || | |||||    
T  36544258 aaccaatttggttttatgcctgggaggtcgactatggaagcaatctacttacttcgacgcgtgattgagcgatatctgacggataaaaaagatttgcact 36544357  T
Q  313 tagtttttattgatttggagaagacatatgatagagt 349  Q
    ||||||| ||||||||||| ||| | |||||||||||    
T  36544358 tagttttcattgatttgga-aaggcgtatgatagagt 36544393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 309 - 349
Target Start/End: Complemental strand, 42855093 - 42855053
Alignment:
Q  309 cacttagtttttattgatttggagaagacatatgatagagt 349  Q
    ||||||||||| ||||||||||||||| |||||||||||||    
T  42855093 cacttagttttcattgatttggagaaggcatatgatagagt 42855053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 8e-20; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 235 - 349
Target Start/End: Complemental strand, 29173683 - 29173569
Alignment:
Q  235 ggaggttgacaatagaagcaatatacttactacgacgtgtgatggagcaatatccaatggttcaaaaggagtcgcacttagtttttattgatttggagaa 334  Q
    |||||| ||| || |||||||| |||||||| |||||||||||||||| |||||  | || | |||| || | |||||||||||||||||||||||||||    
T  29173683 ggaggtcgactatggaagcaatttacttacttcgacgtgtgatggagcgatatcagacggataaaaaagacttgcacttagtttttattgatttggagaa 29173584  T
Q  335 gacatatgatagagt 349  Q
    | | |||||||||||    
T  29173583 ggcgtatgatagagt 29173569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 213 - 349
Target Start/End: Complemental strand, 43241557 - 43241421
Alignment:
Q  213 aaccaattttgattaatgcttgggaggttgacaatagaagcaatatacttactacgacgtgtgatggagcaatatccaatggttcaaaaggagtcgcact 312  Q
    ||||||||| | || |||| |||||||| ||| || |||||||| |||||||| ||||| |||||||||| |||||  | || | |||| || | |||||    
T  43241557 aaccaatttggttttatgcctgggaggtcgactatggaagcaatctacttacttcgacgcgtgatggagcgatatcggacggataaaaaagacttgcact 43241458  T
Q  313 tagtttttattgatttggagaagacatatgatagagt 349  Q
    ||||||| ||||||||||| ||||| |||||||||||    
T  43241457 tagttttcattgatttggaaaagacgtatgatagagt 43241421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 228 - 349
Target Start/End: Original strand, 8671039 - 8671160
Alignment:
Q  228 atgcttgggaggttgacaatagaagcaatatacttactacgacgtgtgatggagcaatatccaatggttcaaaaggagtcgcacttagtttttattgatt 327  Q
    |||| |||||||| ||| || |||||||| |||||||| ||||| |||||||||| |||||  | || | |||| || | |||||||||||| |||||||    
T  8671039 atgcctgggaggtcgactatggaagcaatctacttacttcgacgcgtgatggagcgatatcggacggataaaaaagacttgcacttagttttcattgatt 8671138  T
Q  328 tggagaagacatatgatagagt 349  Q
    |||| ||| | |||||||||||    
T  8671139 tggaaaaggcgtatgatagagt 8671160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 213 - 331
Target Start/End: Complemental strand, 49348578 - 49348460
Alignment:
Q  213 aaccaattttgattaatgcttgggaggttgacaatagaagcaatatacttactacgacgtgtgatggagcaatatccaatggttcaaaaggagtcgcact 312  Q
    ||||||||| | || |||| |||||||| ||| || |||||||| |||||||| ||||| |||||||||| |||||  | || | |||| || | |||||    
T  49348578 aaccaatttggttttatgcctgggaggtcgactatggaagcaatctacttacttcgacgcgtgatggagcgatatcggacggataaaaaagacttgcact 49348479  T
Q  313 tagtttttattgatttgga 331  Q
    ||||||| |||||||||||    
T  49348478 tagttttcattgatttgga 49348460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 213 - 349
Target Start/End: Complemental strand, 51441940 - 51441804
Alignment:
Q  213 aaccaattttgattaatgcttgggaggttgacaatagaagcaatatacttactacgacgtgtgatggagcaatatccaatggttcaaaaggagtcgcact 312  Q
    ||||||||| | || |||| |||||||| ||| || |||||||| |||||||  ||||| |||||||||  |||||  | || | |||| || | |||||    
T  51441940 aaccaatttggttttatgcctgggaggtcgactatggaagcaatctacttacatcgacgcgtgatggagtgatatcagacggataaaaaagacttgcact 51441841  T
Q  313 tagtttttattgatttggagaagacatatgatagagt 349  Q
    ||||||| ||||||||||| ||  | |||||||||||    
T  51441840 tagttttcattgatttggaaaaagcgtatgatagagt 51441804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 213 - 349
Target Start/End: Original strand, 22346618 - 22346754
Alignment:
Q  213 aaccaattttgattaatgcttgggaggttgacaatagaagcaatatacttactacgacgtgtgatggagcaatatccaatggttcaaaaggagtcgcact 312  Q
    ||||||||| | || |||| |||||||| ||| || |||||||| |||||||| ||||  |||||||||| ||||| || || | |||| || | |||||    
T  22346618 aaccaatttggttttatgcctgggaggtcgactatggaagcaatctacttacttcgacacgtgatggagcgatatcgaacggataaaaaagacttgcact 22346717  T
Q  313 tagtttttattgatttggagaagacatatgatagagt 349  Q
    ||||||| ||||||||||| ||| | |||||||||||    
T  22346718 tagttttcattgatttggaaaaggcgtatgatagagt 22346754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 213 - 349
Target Start/End: Complemental strand, 33350982 - 33350846
Alignment:
Q  213 aaccaattttgattaatgcttgggaggttgacaatagaagcaatatacttactacgacgtgtgatggagcaatatccaatggttcaaaaggagtcgcact 312  Q
    ||||||||| | || ||||||||||||| ||| || |||||||| |||||||| | ||| |||||||||| |||||  | || | |||| || | |||||    
T  33350982 aaccaatttggttttatgcttgggaggtcgactatggaagcaatctacttacttcaacgcgtgatggagcgatatcggacggataaaaaagacttgcact 33350883  T
Q  313 tagtttttattgatttggagaagacatatgatagagt 349  Q
    |||||||  |||||||||| |||   |||||||||||    
T  33350882 tagttttctttgatttggaaaaggggtatgatagagt 33350846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 249 - 349
Target Start/End: Original strand, 36651136 - 36651236
Alignment:
Q  249 gaagcaatatacttactacgacgtgtgatggagcaatatccaatggttcaaaaggagtcgcacttagtttttattgatttggagaagacatatgatagag 348  Q
    |||||||| |||||||| ||||| |||||||||| |||||  | || | |||| || | |||||||||||| ||||||||||| ||| | ||||||||||    
T  36651136 gaagcaatctacttacttcgacgcgtgatggagcgatatcggacggataaaaaagacttgcacttagttttcattgatttggaaaaggcgtatgatagag 36651235  T
Q  349 t 349  Q
    |    
T  36651236 t 36651236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 213 - 349
Target Start/End: Complemental strand, 45368802 - 45368666
Alignment:
Q  213 aaccaattttgattaatgcttgggaggttgacaatagaagcaatatacttactacgacgtgtgatggagcaatatccaatggttcaaaaggagtcgcact 312  Q
    ||||||||| | || |||| |||||||||||| || ||||| ||||||||||| ||||| |||||||||| |||||  | || | ||||| | |  ||||    
T  45368802 aaccaatttggctttatgcctgggaggttgactatggaagcgatatacttacttcgacgcgtgatggagcgatatcggacggataaaaagaacttacact 45368703  T
Q  313 tagtttttattgatttggagaagacatatgatagagt 349  Q
    ||||||| |||||||| |||||| | |||||||||||    
T  45368702 tagttttcattgattttgagaaggcgtatgatagagt 45368666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 213 - 349
Target Start/End: Complemental strand, 452792 - 452656
Alignment:
Q  213 aaccaattttgattaatgcttgggaggttgacaatagaagcaatatacttactacgacgtgtgatggagcaatatccaatggttcaaaaggagtcgcact 312  Q
    ||||||||| | || |||| |||||||| ||| || |||||||| |||||||| ||||| |||||||||| |||||  | || | |||| || | |||||    
T  452792 aaccaatttggttttatgcctgggaggtcgactatggaagcaatctacttacttcgacgcgtgatggagcgatatcggacggataaaaaagacttgcact 452693  T
Q  313 tagtttttattgatttggagaagacatatgatagagt 349  Q
    ||||||| ||||||||||| ||| | || ||||||||    
T  452692 tagttttcattgatttggaaaaggcgtacgatagagt 452656  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 213 - 349
Target Start/End: Original strand, 8179899 - 8180035
Alignment:
Q  213 aaccaattttgattaatgcttgggaggttgacaatagaagcaatatacttactacgacgtgtgatggagcaatatccaatggttcaaaaggagtcgcact 312  Q
    ||||||||| | || |||| |||||||| ||| ||  ||||||| ||||||||  |||| |||||||||| |||||  | || | |||| || | |||||    
T  8179899 aaccaatttggttttatgcctgggaggtcgactatgaaagcaatctacttactttgacgcgtgatggagcgatatcggacggataaaaaagacttgcact 8179998  T
Q  313 tagtttttattgatttggagaagacatatgatagagt 349  Q
    | ||||| ||||||||||| ||||| |||||||||||    
T  8179999 tggttttcattgatttggaaaagacgtatgatagagt 8180035  T

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Target: scaffold0606 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 235 - 349
Target Start/End: Original strand, 8819 - 8933
Alignment:
Q  235 ggaggttgacaatagaagcaatatacttactacgacgtgtgatggagcaatatccaatggttcaaaaggagtcgcacttagtttttattgatttggagaa 334  Q
    |||||| ||| ||| || ||||||||||||||| | |||||| |||||  |||  ||||| ||||||||| | || ||||||||| ||||||||| ||||    
T  8819 ggaggtcgaccataaaaacaatatacttactacaatgtgtgaaggagcggtatagaatggatcaaaaggacttgcgcttagttttcattgatttgtagaa 8918  T
Q  335 gacatatgatagagt 349  Q
    | |||||||||||||    
T  8919 gtcatatgatagagt 8933  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 235 - 331
Target Start/End: Complemental strand, 17222769 - 17222676
Alignment:
Q  235 ggaggttgacaatagaagcaatatacttactacgacgtgtgatggagcaatatccaatggttcaaaaggagtcgcacttagtttttattgatttgga 331  Q
    |||||||||||||  ||||||| || ||||||||   ||||||||||||||||| ||||  ||||||||| |  |||||||||||||||||||||||    
T  17222769 ggaggttgacaatgaaagcaatgtatttactacg---tgtgatggagcaatatcgaatgtatcaaaaggacttacacttagtttttattgatttgga 17222676  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 228 - 349
Target Start/End: Original strand, 6082521 - 6082642
Alignment:
Q  228 atgcttgggaggttgacaatagaagcaatatacttactacgacgtgtgatggagcaatatccaatggttcaaaaggagtcgcacttagtttttattgatt 327  Q
    |||| |||||||| ||| || |||||||| |||||||| |||| ||||||| ||| |||||  | || | ||||||| | |||||||||||| |||||||    
T  6082521 atgcctgggaggtcgactatggaagcaatctacttacttcgacatgtgatgcagcgatatcggacggataaaaaggacttgcacttagttttcattgatt 6082620  T
Q  328 tggagaagacatatgatagagt 349  Q
    |||| |||   |||||||||||    
T  6082621 tggaaaaggtgtatgatagagt 6082642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 228 - 349
Target Start/End: Complemental strand, 20428798 - 20428677
Alignment:
Q  228 atgcttgggaggttgacaatagaagcaatatacttactacgacgtgtgatggagcaatatccaatggttcaaaaggagtcgcacttagtttttattgatt 327  Q
    ||||||||||||||||| || ||||| || ||||||||  ||||||||||||||| |||||  | || | |||| || |  ||| ||||||| |||||||    
T  20428798 atgcttgggaggttgactatggaagcgatctacttactttgacgtgtgatggagcgatatcggacggataaaaaagacttacacctagttttcattgatt 20428699  T
Q  328 tggagaagacatatgatagagt 349  Q
    || ||||| | |||||||||||    
T  20428698 tgtagaaggcgtatgatagagt 20428677  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 235 - 288
Target Start/End: Original strand, 30670022 - 30670075
Alignment:
Q  235 ggaggttgacaatagaagcaatatacttactacgacgtgtgatggagcaatatc 288  Q
    |||||| ||| || |||||||| |||||||| |||||||||||||||| |||||    
T  30670022 ggaggtcgactatggaagcaatctacttacttcgacgtgtgatggagcgatatc 30670075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 211 - 345
Target Start/End: Original strand, 17212372 - 17212506
Alignment:
Q  211 aaaaccaattttgattaatgcttgggaggttgacaatagaagcaatatacttactacgacgtgtgatggagcaatatccaatggttcaaaaggagtcgca 310  Q
    ||||||||||| | || || |||||||||  |||||| ||| ||||||||| | ||| || ||||||||| | ||||| ||||| |||||| || | |||    
T  17212372 aaaaccaatttggttttattcttgggaggccgacaatggaaacaatatactaattacaacatgtgatggatctatatcgaatgggtcaaaatgacttgca 17212471  T
Q  311 cttagtttttattgatttggagaagacatatgata 345  Q
    ||||| ||| ||||||||| ||||||| |||||||    
T  17212472 cttagatttcattgatttgaagaagacgtatgata 17212506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 31503128 - 31503091
Alignment:
Q  308 gcacttagtttttattgatttggagaagacatatgata 345  Q
    ||||||||||||||||||||||||||||||||||||||    
T  31503128 gcacttagtttttattgatttggagaagacatatgata 31503091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 213 - 349
Target Start/End: Complemental strand, 2076650 - 2076514
Alignment:
Q  213 aaccaattttgattaatgcttgggaggttgacaatagaagcaatatacttactacgacgtgtgatggagcaatatccaatggttcaaaaggagtcgcact 312  Q
    ||||||||| | || |||| |||||||| ||| || |||||||| |||||||| ||||| | |||||||| |||||  | || | |||| || | |||||    
T  2076650 aaccaatttggttttatgcctgggaggtcgactatggaagcaatctacttacttcgacgcgggatggagcgatatcggacggataaaaaagacttgcact 2076551  T
Q  313 tagtttttattgatttggagaagacatatgatagagt 349  Q
    || |||| ||||||||||| ||| | |||||||||||    
T  2076550 taattttcattgatttggaaaaggcgtatgatagagt 2076514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 249 - 349
Target Start/End: Original strand, 24177666 - 24177766
Alignment:
Q  249 gaagcaatatacttactacgacgtgtgatggagcaatatccaatggttcaaaaggagtcgcacttagtttttattgatttggagaagacatatgatagag 348  Q
    |||||||| |||||||| |||||  ||||||||| |||||  | || | |||| || | |||||||||||| ||||||||| | ||| ||||||||||||    
T  24177666 gaagcaatctacttacttcgacgcatgatggagcgatatcggacggataaaaaagacttgcacttagttttcattgatttgaaaaaggcatatgatagag 24177765  T
Q  349 t 349  Q
    |    
T  24177766 t 24177766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 27100 - 27186
Alignment:
Q  249 gaagcaatatacttactacgacgtgtgatggagcaatatccaatggttcaaaaggagtcgcacttagtttttattgatttggagaag 335  Q
    ||||| || |||||||| | |||||||||| ||| ||||| || || | |||| || | |||||||||||| |||||||||||||||    
T  27100 gaagcgatctacttacttcaacgtgtgatgaagcgatatcgaacggataaaaaagacttgcacttagttttcattgatttggagaag 27186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 228 - 286
Target Start/End: Complemental strand, 34734764 - 34734706
Alignment:
Q  228 atgcttgggaggttgacaatagaagcaatatacttactacgacgtgtgatggagcaata 286  Q
    |||||||||||||  ||||| ||||||||||||||||||| || |||||  ||||||||    
T  34734764 atgcttgggaggtcaacaatggaagcaatatacttactacaacttgtgaatgagcaata 34734706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 228 - 343
Target Start/End: Complemental strand, 50630480 - 50630365
Alignment:
Q  228 atgcttgggaggttgacaatagaagcaatatacttactacgacgtgtgatggagcaatatccaatggttcaaaaggagtcgcacttagtttttattgatt 327  Q
    ||||||| ||||| ||| || |||||||| ||||||| || || |||||||||||| |||   |||| | |||| || | |||||||||||| |||||||    
T  50630480 atgcttgcgaggtcgaccatggaagcaatctacttaccacaacatgtgatggagcagtataagatggataaaaaagacttgcacttagttttcattgatt 50630381  T
Q  328 tggagaagacatatga 343  Q
    |||||||| |||||||    
T  50630380 tggagaaggcatatga 50630365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 233 - 349
Target Start/End: Complemental strand, 51448865 - 51448749
Alignment:
Q  233 tgggaggttgacaatagaagcaatatacttactacgacgtgtgatggagcaatatccaatggttcaaaaggagtcgcacttagtttttattgatttggag 332  Q
    |||||||| ||| || |||||||| || ||||| ||||| |||||||||| |||||  | || | |||| || | |||||||||||| |||||||||||     
T  51448865 tgggaggtcgactatggaagcaatctatttacttcgacgcgtgatggagcgatatcggacggataaaaaagacttgcacttagttttcattgatttggaa 51448766  T
Q  333 aagacatatgatagagt 349  Q
    ||| | |||||||||||    
T  51448765 aaggcgtatgatagagt 51448749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 213 - 349
Target Start/End: Original strand, 30574 - 30710
Alignment:
Q  213 aaccaattttgattaatgcttgggaggttgacaatagaagcaatatacttactacgacgtgtgatggagcaatatccaatggttcaaaaggagtcgcact 312  Q
    ||||||||| | || |||| |||||||| ||| || |||||||| |||||||| | ||| |||||| ||| |||||  | || | |||| || | |||||    
T  30574 aaccaatttggttttatgcctgggaggtcgactatggaagcaatctacttacttcaacgcgtgatgaagcgatatcagacggataaaaaagacttgcact 30673  T
Q  313 tagtttttattgatttggagaagacatatgatagagt 349  Q
    ||||||| ||||| ||||| ||| | |||||||||||    
T  30674 tagttttcattgaattggaaaaggcgtatgatagagt 30710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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