View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13186_high_4 (Length: 654)
Name: NF13186_high_4
Description: NF13186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13186_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Complemental strand, 20638064 - 20637592
Alignment:
| Q |
1 |
ctttgttcacccgcaccaatcagcatcttcgaagtgcggtcctgtatagcacacaaattacaagtaaactggacgttacaattgagttcatctagtaatt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
20638064 |
ctttgttcacccgcaccaatcagcatcttcgaagtgcggtcctgtatagcacaaaaattaccattaaactggacgttacaattgagttcatctagtaatt |
20637965 |
T |
|
| Q |
101 |
gtgaaatagagattaagttgcaattcaattcaggaacataaagcatgttttcaagtcttagaccatcagtgagctttactgttccttccttagtacatgt |
200 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20637964 |
gtgaaatagagattaagttgcaattcaatttaggaacataaagcacgttttcaagtcttagaccatcagtgagctttactgttccttccttagtacatgt |
20637865 |
T |
|
| Q |
201 |
agtagtgcgaccgttagggagtccaacatgacatccaattacttcttttacatcatacatgtattgtaaggttcctgtcatatgattagacgccccacta |
300 |
Q |
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|
||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20637864 |
agtagtgcgacagttagggagtccaacaggacatccaattacttcttttacatcatgcatgtattgtaaggttcctgtcatatgattagacgccccacta |
20637765 |
T |
|
| Q |
301 |
tcgaggatccatgattcgagtttagtcttattagacatgctttcatttggagtcaccttcgagctattcagaagttccaccaaagtttgccactgctcct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20637764 |
tcgaggatccatgattcgagtttagtcttaccagacatgctttcatttggagtcaccttcgagctattcagaagttccaccaaagtttgccactgctcct |
20637665 |
T |
|
| Q |
401 |
tgcttaatcctgtcatgttggagttttttgaatctccaccaacattggatcccaaattctgatttgcatgagc |
473 |
Q |
| |
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|||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
20637664 |
tgcttaattctgtcatgttggagttttctgaatctccaccaacattggatcccaagttctgaactgcatgagc |
20637592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 465 - 648
Target Start/End: Complemental strand, 20637573 - 20637389
Alignment:
| Q |
465 |
tgcatgagcaccacttgatctggtacctctagtgcggttctggcctcttcctcaccctactgccttgtcatcatttctaggacgttcaccccaccaatct |
564 |
Q |
| |
|
|||| ||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
20637573 |
tgcacgagcaccacttgatccggtacctccagtgcggttttggcctcttcctcaccctactgccttgtcatcatttctgggacgttcaccccaccattct |
20637474 |
T |
|
| Q |
565 |
gggtatccaattagcaag-aacaacccgcttcatcatgaccagctctgttgcaatgtgcacagacagatttgtttttcatctcac |
648 |
Q |
| |
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||||||||||| |||||| ||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
20637473 |
gggtatccaatcagcaagaaacaacccgcttcgtcatgaccaactctgttgcagtgtgcacagacagatttgtttttgatctcac |
20637389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 90; Significance: 4e-43; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 5 - 417
Target Start/End: Complemental strand, 33157246 - 33156834
Alignment:
| Q |
5 |
gttcacccgcaccaatcagcatcttcgaagtgcggtcctgtatagcacacaaattacaagtaaactggacgttacaattgag-ttcatctagtaattgtg |
103 |
Q |
| |
|
|||||||| |||||||||||||||| ||||| |||||||||| |||| |||||| ||| |||||||| || || ||||| ||||||| | ||||| |
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|
| T |
33157246 |
gttcacccagaccaatcagcatcttcaaagtgaagtcctgtataacacataaattagcagtgaactggacattgca-ttgagattcatctgacagttgtg |
33157148 |
T |
|
| Q |
104 |
aaatagagattaagttgcaattcaattcaggaacataaagcatgttttcaagtcttagaccatcagtgagctttactgttccttccttagtacatgtagt |
203 |
Q |
| |
|
| ||||||||||| ||||| |||| | |||||||||||||| ||||| ||| | | ||||||| ||||||||||| ||||||||||| | || || |
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|
| T |
33157147 |
atatagagattaaattgcatttcagctgaggaacataaagcacgttttttagtttcaagccatcagcaagctttactgtcccttccttagttgaagtggt |
33157048 |
T |
|
| Q |
204 |
agtgcgaccgttagggagtccaacatgacatccaattacttcttttacatcatacatgtattgtaaggttcctgtcatatgattagacgccccactatcg |
303 |
Q |
| |
|
|||| |||||||| ||||||||| |||| || | ||||||| ||| ||| ||| || |||||||||||||||||||||||| || |||||||| || |
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|
| T |
33157047 |
agtgtctccgttaggaagtccaacaggacaccccaatacttctcgtacgtcacacaagtgttgtaaggttcctgtcatatgattggaagccccactgtcc |
33156948 |
T |
|
| Q |
304 |
aggatccatgattcgagtttagtcttattagacatgctttcatttggagtcaccttcgagctattcagaagttccaccaaagtttgccactgctccttgc |
403 |
Q |
| |
|
| |||||| | | ||||||||||||| || |||||||||||||||||| ||||| || | || || | |||| |||||| ||||| |||||| | | |
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|
| T |
33156947 |
aaaatccataaattgagtttagtcttaccagtcatgctttcatttggagtgaccttggaagtgttgagcatatccatcaaagtctgccattgctccctac |
33156848 |
T |
|
| Q |
404 |
ttaatcctgtcatg |
417 |
Q |
| |
|
||| |||||||||| |
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|
| T |
33156847 |
ttagtcctgtcatg |
33156834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 31401266 - 31401214
Alignment:
| Q |
3 |
ttgttcacccgcaccaatcagcatcttcgaagtgcggtcctgtatagcacaca |
55 |
Q |
| |
|
|||||||||||| |||||| |||| |||||||||||||||||||| |||||| |
|
|
| T |
31401266 |
ttgttcacccgctccaatcgtcatcctcgaagtgcggtcctgtataacacaca |
31401214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 13710996 - 13710944
Alignment:
| Q |
3 |
ttgttcacccgcaccaatcagcatcttcgaagtgcggtcctgtatagcacaca |
55 |
Q |
| |
|
|||||||||||| |||||| |||| |||||||||||||||||||| |||||| |
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|
| T |
13710996 |
ttgttcacccgctccaatcgtcatcctcgaagtgcggtcctgtataacacaca |
13710944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 27685290 - 27685238
Alignment:
| Q |
3 |
ttgttcacccgcaccaatcagcatcttcgaagtgcggtcctgtatagcacaca |
55 |
Q |
| |
|
|||||||||||| |||||| |||| |||||||||||||||||||| |||||| |
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|
| T |
27685290 |
ttgttcacccgctccaatcgtcatcctcgaagtgcggtcctgtataacacaca |
27685238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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