View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13186_high_5 (Length: 562)

Name: NF13186_high_5
Description: NF13186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13186_high_5
NF13186_high_5
[»] chr1 (4 HSPs)
chr1 (12-541)||(44837888-44838417)
chr1 (132-441)||(44849095-44849392)
chr1 (184-266)||(44817227-44817309)
chr1 (184-266)||(44834584-44834666)
[»] chr3 (1 HSPs)
chr3 (184-266)||(17570995-17571077)
[»] chr7 (2 HSPs)
chr7 (399-452)||(47980378-47980431)
chr7 (216-272)||(48222511-48222567)
[»] chr8 (2 HSPs)
chr8 (389-454)||(24367486-24367551)
chr8 (405-454)||(24455103-24455152)
[»] chr5 (1 HSPs)
chr5 (397-454)||(19135858-19135915)
[»] scaffold0027 (1 HSPs)
scaffold0027 (389-454)||(148848-148913)
[»] chr2 (1 HSPs)
chr2 (198-266)||(43901273-43901341)


Alignment Details
Target: chr1 (Bit Score: 526; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 12 - 541
Target Start/End: Original strand, 44837888 - 44838417
Alignment:
Q  12 atgaatctcgcaggtcattgcaacccatcacttccaaattcatgcacaaaattcagctcagaaatcaaagattgccaaagtaaaggaatcaaagttttac 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44837888 atgaatctcgcaggtcattgcaacccatcacttccaaattcatgcacaaaattcagctcagaaatcaaagattgccaaagtaaaggaatcaaagttttac 44837987  T
Q  112 tttcaattggtggcggaattggaagctattctttatcttcaattgaggatgcaagaaacgtttcaaaatttttatggaacactttcttgggtggcaagtc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44837988 tttcaattggtggcggaattggaagctattctttatcttcaattgaggatgcaagaaacgtttcaaaatttttatggaacactttcttgggtggcaagtc 44838087  T
Q  212 atcttcaagaccattaggtgatgctgttttagatggaatagattttgatattgaacttggttccaccgaaaattggcaacaccttgcaggttttcttaaa 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44838088 atcttcaagaccattaggtgatgctgttttagatggaatagattttgatattgaacttggttccaccgaaaattggcaacaccttgcaggttttcttaaa 44838187  T
Q  312 gggtatagtagatatggaaaaaaggtgtatcttggtgctgctcctcaatgtccaattccagataaatttttgggcactgcacttgaaacaggtctttttg 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44838188 gggtatagtagatatggaaaaaaggtgtatcttggtgctgctcctcaatgtccaattccagataaatttttgggcactgcacttgaaacaggtctttttg 44838287  T
Q  412 actttgtttgggtacaattttacaataatcctccttgtcaatataatggaaacataactaaccttgtgaattcatggaataaatggactagtaatgttcc 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  44838288 actttgtttgggtacaattttacaataatcctccttgtcaatataatggaaacataactaaccttgtgaattcatggaataaatggaatagtaatgttcc 44838387  T
Q  512 aagagggaagatatttttagggctgccggc 541  Q
    ||||||||||||||||||||||||||||||    
T  44838388 aagagggaagatatttttagggctgccggc 44838417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 132 - 441
Target Start/End: Original strand, 44849095 - 44849392
Alignment:
Q  132 ggaagctattctttatcttcaattgaggatgcaagaaacgtttcaaaatttttatggaacactttcttgggtggcaagtcatcttcaagaccattaggtg 231  Q
    ||||| || ||||| ||||||||||||||||| |||| | | |||| || |||||||||||||||||||||||||| ||||| |||||||||||| ||||    
T  44849095 ggaagatactctttgtcttcaattgaggatgctagaagcttctcaagatatttatggaacactttcttgggtggcacgtcatattcaagaccatttggtg 44849194  T
Q  232 atgctgttttagatggaatagattttgatattgaacttggttccaccgaaaattggcaacaccttgcaggttttcttaaagggtatagtagatatggaaa 331  Q
    ||||||| |||||||| ||||||||||| |||||| ||||||||||  |||||||||||||||||||| | ||||| || |  ||||      | ||       
T  44849195 atgctgtgttagatggcatagattttgacattgaaattggttccacaaaaaattggcaacaccttgcacgatttctcaaggattata------acgg--- 44849285  T
Q  332 aaaggtgtatcttggtgctgctcctcaatgtccaattccagataaatttttgggcactgcacttgaaacaggtctttttgactttgtttgggtacaattt 431  Q
       ||| |||||  |||||||||||||||||||| |||| |||| ||| || || |  || ||||||||||| |||||||||||||||||||| || ||     
T  44849286 ---ggtttatctaagtgctgctcctcaatgtccatttcctgatagattcttaggaagagcccttgaaacaggactttttgactttgtttgggttcagttc 44849382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 184 - 266
Target Start/End: Original strand, 44817227 - 44817309
Alignment:
Q  184 tatggaacactttcttgggtggcaagtcatcttcaagaccattaggtgatgctgttttagatggaatagattttgatattgaa 266  Q
    ||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  44817227 tatggaacaatttcttgggtggcacatcatcttcaagaccattaggtgatgctgttttggatggaattgattttgatattgaa 44817309  T

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Target: chr1; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 184 - 266
Target Start/End: Original strand, 44834584 - 44834666
Alignment:
Q  184 tatggaacactttcttgggtggcaagtcatcttcaagaccattaggtgatgctgttttagatggaatagattttgatattgaa 266  Q
    ||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||    
T  44834584 tatggaacaatttcttgggtggcacgtcatcttcaagacctttaggtgatgctgttttggatggaattgattttgatattgaa 44834666  T

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Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 184 - 266
Target Start/End: Complemental strand, 17571077 - 17570995
Alignment:
Q  184 tatggaacactttcttgggtggcaagtcatcttcaagaccattaggtgatgctgttttagatggaatagattttgatattgaa 266  Q
    ||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  17571077 tatggaacaatttcttgggtggcacatcatcttcaagaccattaggtgatgctgttttggatggaattgattttgatattgaa 17570995  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 399 - 452
Target Start/End: Original strand, 47980378 - 47980431
Alignment:
Q  399 acaggtctttttgactttgtttgggtacaattttacaataatcctccttgtcaa 452  Q
    |||||||||||||||| ||||||||| ||||||||||| ||||| |||||||||    
T  47980378 acaggtctttttgactatgtttgggtgcaattttacaacaatccaccttgtcaa 47980431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 216 - 272
Target Start/End: Complemental strand, 48222567 - 48222511
Alignment:
Q  216 tcaagaccattaggtgatgctgttttagatggaatagattttgatattgaacttggt 272  Q
    ||||||||||||||||||| ||| || |||||  |||||||||| |||||| |||||    
T  48222567 tcaagaccattaggtgatgttgtgttggatggtgtagattttgacattgaagttggt 48222511  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 389 - 454
Target Start/End: Complemental strand, 24367551 - 24367486
Alignment:
Q  389 tgcacttgaaacaggtctttttgactttgtttgggtacaattttacaataatcctccttgtcaata 454  Q
    |||||||  |||||| |||||||| | ||||||||||||||| ||||| || ||||||||||||||    
T  24367551 tgcacttacaacaggactttttgattatgtttgggtacaattctacaacaaccctccttgtcaata 24367486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 405 - 454
Target Start/End: Complemental strand, 24455152 - 24455103
Alignment:
Q  405 ctttttgactttgtttgggtacaattttacaataatcctccttgtcaata 454  Q
    |||||||| ||||||||||||||||| |||||||| ||| ||||||||||    
T  24455152 ctttttgattttgtttgggtacaattctacaataacccttcttgtcaata 24455103  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 397 - 454
Target Start/End: Complemental strand, 19135915 - 19135858
Alignment:
Q  397 aaacaggtctttttgactttgtttgggtacaattttacaataatcctccttgtcaata 454  Q
    ||||||||||||| || | ||||||||| ||||| |||||||| ||||||||||||||    
T  19135915 aaacaggtcttttcgattgtgtttgggttcaattctacaataaccctccttgtcaata 19135858  T

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Target: scaffold0027 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 454
Target Start/End: Original strand, 148848 - 148913
Alignment:
Q  389 tgcacttgaaacaggtctttttgactttgtttgggtacaattttacaataatcctccttgtcaata 454  Q
    |||||||  |||||| || ||||| | |||||||||||| || |||||||| ||||||||||||||    
T  148848 tgcacttacaacaggcctctttgattatgtttgggtacagttctacaataaccctccttgtcaata 148913  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 198 - 266
Target Start/End: Original strand, 43901273 - 43901341
Alignment:
Q  198 ttgggtggcaagtcatcttcaagaccattaggtgatgctgttttagatggaatagattttgatattgaa 266  Q
    |||||||| || ||||||||| | ||||| || |||||| | |||||||| || |||||||||||||||    
T  43901273 ttgggtggaaattcatcttcacgtccatttggcgatgctatattagatggtattgattttgatattgaa 43901341  T

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