View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13186_high_6 (Length: 547)
Name: NF13186_high_6
Description: NF13186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13186_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 19 - 530
Target Start/End: Complemental strand, 2794916 - 2794405
Alignment:
| Q |
19 |
ctcattaggatcaatgggtttagccttcaaggcaggcacatgaatttcttgataaccttttctcggaagcctgtaagacccatcaggaagatcacatttt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2794916 |
ctcattaggatcaatgggtttagccttcaaggcaggcacatgaatttcttgataaccttttctcggaagcctgtaagacccatcaggaagatcacatttt |
2794817 |
T |
|
| Q |
119 |
ccctttgtcataaacaaaccaccttgttcaaaagcaaggttatccaaatcaagtatccggcattgacccccattttccccaactccatcaccagttcccc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2794816 |
ccctttgtcataaacaaaccaccttgttcaaaagcaaggttatccaaatcaagcatccggcgttgacccccattttccccaactccatcaccagttcccc |
2794717 |
T |
|
| Q |
219 |
tatcaatgtccatgtccccgtctttcaaccttcgagcctcgtaccttatactcttctccaagttcttctccctctctatagtagaggctttcacaacata |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2794716 |
tatcaatgtccatgtccccgtctttcaaccttcgagcctcgtaccttatactcttctccaagttcttctccctctctatagtagaggctttcacagcata |
2794617 |
T |
|
| Q |
319 |
taactcctccaaaattgactccaaattcgaccccttcatctcttcctcaattttatccctctcttcttgatccctcgccctggccaagctagtacaccac |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2794616 |
taactcctccaaaattgactccaaattcgaccccttcatctcttcctcaattttatccctctcttcttgatccctcgccctggccaagctagtacaccac |
2794517 |
T |
|
| Q |
419 |
acaatcttcaacttattctgcatcagaaacttaacaagactaaacttattcaaatcaaaataccccagcaacctcttctccacttctcggtcatcagcct |
518 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
2794516 |
acaatcttcaacttattctgcattagaaacttaacaagactaaacttattcaaatcaaaataccccaacaacctcttctccacttctctgtcatcagcct |
2794417 |
T |
|
| Q |
519 |
cacccaaaacct |
530 |
Q |
| |
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|||||||||||| |
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| T |
2794416 |
cacccaaaacct |
2794405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 19 - 171
Target Start/End: Complemental strand, 29262429 - 29262277
Alignment:
| Q |
19 |
ctcattaggatcaatgggtttagccttcaaggcaggcacatgaatttcttgataaccttttctcg-gaagcctgtaagacccatcaggaagatcacattt |
117 |
Q |
| |
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|||||||||||||| ||||||||||||||| || || |||||||| |||| |||||||||| ||| || |||| ||||||||||||||||| |||||||| |
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| T |
29262429 |
ctcattaggatcaaggggtttagccttcaatgctggaacatgaatctcttcataacctttt-tcgagatgcctataagacccatcaggaaggtcacattt |
29262331 |
T |
|
| Q |
118 |
tccctttgtcataaacaaaccaccttgttcaaaagcaaggttatccaaatcaag |
171 |
Q |
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| T |
29262330 |
tttctttgccataaataacccaccttgttcaaaagtgaggttatctaaatcaag |
29262277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 467
Target Start/End: Complemental strand, 29262049 - 29261933
Alignment:
| Q |
351 |
ccttcatctcttcctcaattttatccctctcttcttgatccctcgccctggccaagctagtacaccacacaatcttcaacttattctgcatcagaaactt |
450 |
Q |
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||||||||||||||||||| | || |||||||| ||||| ||||| ||||| | ||||||||||| ||| |||| | |||| ||| || |||||| |
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| T |
29262049 |
ccttcatctcttcctcaatcgtctctctctcttcctgatcttgtgccctcgccaaacgagtacaccacaaaattttcagcctatttcgcaacaaaaactt |
29261950 |
T |
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| Q |
451 |
aacaagactaaacttat |
467 |
Q |
| |
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|| |||||||||||||| |
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| T |
29261949 |
aataagactaaacttat |
29261933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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