View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13186_high_9 (Length: 492)
Name: NF13186_high_9
Description: NF13186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13186_high_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 84 - 477
Target Start/End: Complemental strand, 56099467 - 56099047
Alignment:
| Q |
84 |
ttattaatttgagtactactacatagttaggatagggattctaactagcttctcctttgatgttcatgatgaatcatcaaacaaaa------caactact |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
56099467 |
ttattaatttgagtactactacatagttaggatagggattctaactagcttctcctttgatgttcatgatgaatcatcaaacaaaaacaaaacaactact |
56099368 |
T |
|
| Q |
178 |
cgatcatagttaagcataaaataataagtcttggtgatgtctgtccagtactcatttatattgatggtgatgatgatgaccattggcttcagcatttgca |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56099367 |
cgatcatagttaagcataaaataataagtcttggtgatgtctgtccagtactcatttatattgatggtgatgatgatgaccattggcttcagcatttgca |
56099268 |
T |
|
| Q |
278 |
agtgcctgagaatgagatgagcctccagcagcatt---------tggtacattattattattatta------------ccatccctcatcatataagttg |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
56099267 |
agtgcctgagaatgagatgagcctccagcagcattagcagcatttggtgcattattattattattattattattattaccatccctcatcatataagttg |
56099168 |
T |
|
| Q |
357 |
gtgcagcattaccataataccctccatttggatgaccgatatgaaactgtgggacaaacccccctaaatttccatattccatacccctctttcccaaagg |
456 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56099167 |
gtgcagcattaccataataccctccatttggatgaccgatatgaaactgtgggacaaacccccctaaatttccatattccatacccctctttcccaaagg |
56099068 |
T |
|
| Q |
457 |
ttcaactctcattgaggtacg |
477 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
56099067 |
ttcaactctcattgaggtacg |
56099047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University