View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13186_low_1 (Length: 788)

Name: NF13186_low_1
Description: NF13186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13186_low_1
NF13186_low_1
[»] chr7 (1 HSPs)
chr7 (11-770)||(7904897-7905646)


Alignment Details
Target: chr7 (Bit Score: 610; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 610; E-Value: 0
Query Start/End: Original strand, 11 - 770
Target Start/End: Original strand, 7904897 - 7905646
Alignment:
Q  11 acatcatcaaagggaggtccatcatcaatgtggagacgacaagcataatcaagaggagtactaaccggtttacaagtggttaggcctgcatctgaaagta 110  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  7904897 acatcatcaaagggaggtccatcatcaatgtgaagaagacaagcataatcaagaggagtactaaccgatttacaagtggttaggcctgcatctgaaagta 7904996  T
Q  111 agtcgaggcaatatttgcgttgacagagggatatacctttaaaccttttgaggaatgagcaacctccaagccaagaaagaacttgagctggccaaggtct 210  Q
    ||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  7904997 agtcgaggcaatatttgcgttgacagagggatatacct--------tttgaggaatgagcaacctccaagccaagaaagaacttgagctagcctaggtct 7905088  T
Q  211 ttgatacgaaaatgatgatcaagcaattgcttaatctcagcaaaagcagcaaggcagtcaccagccaatataatgtcattcacgtatattaataaagctg 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7905089 ttgatacgaaaatgatgatcaagcaattgcttaatctcagcaaaagcagcaaggcagtcaccagccaatataatgtcattcacgtatattaataaagctg 7905188  T
Q  311 tgaaagaagttggagaagcacgaattaaaaaggagtgatcagctgaagcttgcacaaaaccaatggtcaggaggagtgaaataagcttttcaaaccaacg 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7905189 tgaaagaagttggagaagcacgaattaaaaaggagtgatcagctgaagcttgcacaaaaccaatggtcaggaggagtgaaataagcttttcaaaccaacg 7905288  T
Q  411 ccggctggcatgtttgaggccgtataaggacttgagcagcttacaaacctgcccaggcctaggaggagaaacaccttgaggagggtgcatgtagacatcc 510  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7905289 ccggctggcttgtttgaggccgtataaggacttgagcagcttacaaacctgcccaggcctaggaggagaaacaccttgaggagggtgcatgtagacatcc 7905388  T
Q  511 tcttgaagatcaccgtgcaagaaggcgttgttaacgtctaattggtggagatgccatcgttttatagaagcaacaacaagcaacaatcaaacagttgaca 610  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||| ||||||    
T  7905389 tcttgaagatcaccgtgcaagaaggtgttgttagcgtctaattggtggagatgccatcgtttaatagaagtaacagcaagcaacaatcaaacaattgaca 7905488  T
Q  611 gtttttccaccagagagagtgcnnnnnnnnnnntccacgccttcgatttgattgtaacccttggctacaagacgtgctctatagcgctcaatagaaccat 710  Q
    ||||| |||||||||||||||            |||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||    
T  7905489 gttttgccaccagagagagtg-taaaaaaaaaatccacgccttcgatttgattgtaacccttggctacaagacatgcattatagcgctcaatagaaccat 7905587  T
Q  711 tggcatgccgtttaatcttgaagacccatttgcttccaatgggagaaatattggggggag 770  Q
    |||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  7905588 tggcataccgtttaatc-tgaagatccatttgcttccaatgggagaaatattggggggag 7905646  T

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