View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13186_low_10 (Length: 483)
Name: NF13186_low_10
Description: NF13186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13186_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 32649583 - 32649234
Alignment:
| Q |
1 |
aaaatggttggatattatagacgaggggtccataacccataattatgcattttctatgttccaaaatcccccattaagcatgagaatgttaggcgatctg |
100 |
Q |
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| T |
32649583 |
aaaatggttggatattatagacgaggggtccataacccataattatgcattttctatgttccaaaatcccccattaagcatgagaatattaggcgatctg |
32649484 |
T |
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| Q |
101 |
ctcccacatacaaaaaccacgtgtttcccttagatgtgatgaaccttaagtgacaatttgcacgcttaatttggataattcaattggtattgcttgatga |
200 |
Q |
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| T |
32649483 |
ctcccacatacaaaaaccacgtgtttcccttagatgtgatgaaccttaagtgacaatttgcacgcttaatttggataattcaattggtattgcttgatgg |
32649384 |
T |
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| Q |
201 |
tcctaatcagacaatatcatctattcataaaattcttgtttacactattaattggtgagtaagatctttatagatgtattg-nnnnnnnnccaagtgata |
299 |
Q |
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| T |
32649383 |
tcctaatcagacaatatcatctattcataaaattcttgtttacactattaattggggagtaagatctttatagatgtattgttttttttgtcaagtgata |
32649284 |
T |
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| Q |
300 |
tagtggttagaaattcacattttaagagaaataaatagggtgtatgaggt |
349 |
Q |
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| T |
32649283 |
tagtggttagaaattcacattttaagagaaataaatagggtgtttgaggt |
32649234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 349 - 468
Target Start/End: Complemental strand, 32649190 - 32649071
Alignment:
| Q |
349 |
tcgttccttccataatataatattttcctcaactgagttaaagttcagggacatagatgcataattcttatgcccagttttaataatttggaggtaagtt |
448 |
Q |
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| T |
32649190 |
tcgttccttccataatataatatttccctcaactgagttaaacttcagggatatagatgcataattcttatgcccagttttaataatttggaggtaagtt |
32649091 |
T |
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| Q |
449 |
ttgttggacatagatgcata |
468 |
Q |
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| T |
32649090 |
ttgttggacatagatgcata |
32649071 |
T |
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