View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13186_low_11 (Length: 469)
Name: NF13186_low_11
Description: NF13186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13186_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 18 - 460
Target Start/End: Complemental strand, 5434766 - 5434319
Alignment:
| Q |
18 |
gatatggctcttaagaacacatccttgctagattgtgatcttatgcttaagctgttgtaagctttaatgatatgttt-----tctccctggaaaatttag |
112 |
Q |
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| T |
5434766 |
gatatggctcttaagaacacatccttgctagattatgatcttatgcttaagctgttgtaagctttaatgatatgtttagttttctccctggaaaatttag |
5434667 |
T |
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| Q |
113 |
actatgagctgtcaatggtgttgtggtttttctgcattaaaaagaattaagttttaggctattttctatatttgctttcattgttgattgtttctgattt |
212 |
Q |
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| T |
5434666 |
actatgagctgtcaatggtgttgtggtttttctgcattaaaaagaattaagttttaggctattttctatatttgctttcattgttgattgtttctgattt |
5434567 |
T |
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| Q |
213 |
tgctttccatgaaggaagacaggctgttcttttcatgtgctttaatgttgttctacaaaagggttttgacatttttcatccatattcaagtgtggaaatt |
312 |
Q |
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| T |
5434566 |
tgctttccatgaaggaagacaggctgttcttttcatgtgctttaatgttgttctacaaaagggttttgacatttttcatccatattcaagtttggaaatt |
5434467 |
T |
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| Q |
313 |
cattgtccttcacaatagatcatcctggacctgcttcgtagcnnnnnnnnaaggagatcttcttgcggtgtgtatatttctatcaagggttttaacattt |
412 |
Q |
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| T |
5434466 |
cattgtccttcacaatagatcatcctggacctgcttcgtagcttttttctaaggagatcttcttgcggtgtgtatatttctatcaagggttttaacattt |
5434367 |
T |
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| Q |
413 |
tcatctatatttaaatgtcgaaattcaatgtccttcactattgatgat |
460 |
Q |
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| T |
5434366 |
tcatctatatttaaatgtcgaaattcaatgtccttcactattgatgat |
5434319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 103 - 188
Target Start/End: Complemental strand, 536236 - 536151
Alignment:
| Q |
103 |
gaaaatttagactatgagctgtcaatggtgttgtggtttttctgcattaaaaagaattaagttttaggctattttctatatttgct |
188 |
Q |
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| T |
536236 |
gaaaatttattctatgatttggcaagggtgttgtggtttttctgcactaaaaacaatgaagttttagactctttgctatatttgct |
536151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 213
Target Start/End: Original strand, 555311 - 555385
Alignment:
| Q |
140 |
ttttctgcattaaaaagaattaag-ttttaggctattttctatatttgctttcattgttgattgtttctgatttt |
213 |
Q |
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| T |
555311 |
ttttctgcattaaaaagaatgaagtttttagcctgttttccatatttgctacctttgttgtttgcttctgatttt |
555385 |
T |
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