View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13186_low_18 (Length: 294)
Name: NF13186_low_18
Description: NF13186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13186_low_18 |
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| [»] scaffold0991 (2 HSPs) |
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Alignment Details
Target: scaffold0991 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: scaffold0991
Description:
Target: scaffold0991; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 2012 - 1734
Alignment:
| Q |
1 |
gtttttatgtggggtgtttaaggtctaagattttacttgaaatgttgtttttggtaatatatttaatttgtccgagtgtagagtctaagattttagttga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2012 |
gtttttatgtggggtgtttaaggtctaagattttacttgaaatgttgtttttggtaatatatttaatttgtctgagtgtagagtctaagattttagttga |
1913 |
T |
|
| Q |
101 |
attattgttttaggtgaattagttatgtgcagtgtttgttttgaagtggggtgtttagggtctaagattttacttga---tttattttctagtgaattag |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||| ||||||||||| |
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| T |
1912 |
attattgttttaggtgaattagttatgtgcagtgtttgttttaaagtggggtgtttagggtctaagattttacttgatttttttttttttagtgaattag |
1813 |
T |
|
| Q |
198 |
ttatatggggtgtttcatctgatgttctgtttgcatttgcattaaaaaggtggagttggaggatccggttgagaatatt |
276 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1812 |
ttatatggggtgtttcatctgatgttctgtttgcatttgcattaaaaaggtggagttggaggatccggttgagaatatt |
1734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0991; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 177
Target Start/End: Complemental strand, 2127 - 1973
Alignment:
| Q |
23 |
gtctaagattttacttgaaatgttgtttttggtaatatatttaatttgtccgagtgtagagtctaagattttagttgaattattgttttaggtgaattag |
122 |
Q |
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||||| |||||||||||| | |||| ||||||| ||||| ||||||| |||| || ||||||||||||| |||||| | |||||| |||||||||| |
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| T |
2127 |
gtctaggattttacttgagttattgtagttggtaaattatttgatttgtctgagttcagggtctaagattttacttgaatcactgtttttggtgaattag |
2028 |
T |
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| Q |
123 |
ttatgtgcagtgtttgttttgaagtggggtgtttagggtctaagattttacttga |
177 |
Q |
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|||| || ||||||||||| | |||||||||||| ||||||||||||||||||| |
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| T |
2027 |
ttatatggggtgtttgtttttatgtggggtgtttaaggtctaagattttacttga |
1973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 4834081 - 4834359
Alignment:
| Q |
1 |
gtttttatgtggggtgtttaaggtctaagattttacttgaaatgttgtttttggtaatatatttaatttgtccgagtgtagagtctaagattttagttga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4834081 |
gtttttatgtggggtgtttaaggtctaagattttacttgaaatgttgtttttggtaatatatttaatttgtctgagtgtagagtctaagattttagttga |
4834180 |
T |
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| Q |
101 |
attattgttttaggtgaattagttatgtgcagtgtttgttttgaagtggggtgtttagggtctaagattttacttga---tttattttctagtgaattag |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||| ||||||||||| |
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| T |
4834181 |
attattgttttaggtgaattagttatgtgcagtgtttgttttaaagtggggtgtttagggtctaagattttacttgatttttttttttttagtgaattag |
4834280 |
T |
|
| Q |
198 |
ttatatggggtgtttcatctgatgttctgtttgcatttgcattaaaaaggtggagttggaggatccggttgagaatatt |
276 |
Q |
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| T |
4834281 |
ttatatggggtgtttcatctgatgttctgtttgcatttgcattaaaaaggtggagttggaggatccggttgagaatatt |
4834359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 129
Target Start/End: Original strand, 4822284 - 4822409
Alignment:
| Q |
4 |
tttatgtggggtgtttaaggtctaagattttacttgaaatgttgtttttggtaatatatttaatttgtccgagtgtagagtctaagattttagttgaatt |
103 |
Q |
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|||| ||||| |||||| |||||||||||| ||||||| | |||||||||||||||| ||||||||||| |||| ||| ||||||| |||| ||||||| |
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| T |
4822284 |
tttacgtgggttgtttagggtctaagatttcacttgaattattgtttttggtaatatgtttaatttgtctgagtttagggtctaaggttttgcttgaatt |
4822383 |
T |
|
| Q |
104 |
attgttttaggtgaattagttatgtg |
129 |
Q |
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|||||||| ||||||||||||||||| |
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| T |
4822384 |
attgtttttggtgaattagttatgtg |
4822409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 153 - 276
Target Start/End: Original strand, 4822356 - 4822481
Alignment:
| Q |
153 |
gtttagggtctaagattttacttgatttatt--ttctagtgaattagttatatggggtgtttcatctgatgttctgtttgcatttgcattaaaaaggtgg |
250 |
Q |
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|||||||||||||| |||| ||||| ||||| || | ||||||||||||| || |||||||||| ||||||| ||||||||||| || ||||||||| |
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| T |
4822356 |
gtttagggtctaaggttttgcttgaattattgtttttggtgaattagttatgtgtggtgtttcatttgatgttatgtttgcattttggttgaaaaggtgg |
4822455 |
T |
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| Q |
251 |
agttggaggatccggttgagaatatt |
276 |
Q |
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|||||||||||||||||||||||||| |
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| T |
4822456 |
agttggaggatccggttgagaatatt |
4822481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 177
Target Start/End: Original strand, 4833966 - 4834120
Alignment:
| Q |
23 |
gtctaagattttacttgaaatgttgtttttggtaatatatttaatttgtccgagtgtagagtctaagattttagttgaattattgttttaggtgaattag |
122 |
Q |
| |
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||||| |||||||||||| | |||| ||||||| ||||| ||||||| |||| || ||||||||||||| |||||| | |||||| |||||||||| |
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| T |
4833966 |
gtctaggattttacttgagttattgtagttggtaaattatttgatttgtctgagttcagggtctaagattttacttgaatcactgtttttggtgaattag |
4834065 |
T |
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| Q |
123 |
ttatgtgcagtgtttgttttgaagtggggtgtttagggtctaagattttacttga |
177 |
Q |
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|||| || ||||||||||| | |||||||||||| ||||||||||||||||||| |
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| T |
4834066 |
ttatatggggtgtttgtttttatgtggggtgtttaaggtctaagattttacttga |
4834120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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