View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13186_low_3 (Length: 706)
Name: NF13186_low_3
Description: NF13186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13186_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 615; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 615; E-Value: 0
Query Start/End: Original strand, 1 - 689
Target Start/End: Original strand, 8652910 - 8653609
Alignment:
| Q |
1 |
accggatatgacactgacacatagaaaccaaacgtaactacatgtgcttgtgtctgacacaaatacgtgtcaggcaccggaacggcatcctacacaataa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8652910 |
accggatatgacactgacacatagaaaccaaacgtaactacatgtgcttgtgtctgacacaaatacgtgtcaggcaccggaacggcatcctacacaataa |
8653009 |
T |
|
| Q |
101 |
tctatgaagcagcaatacagatacatataccagatatgacactgacatgtagataccaaaggtaaactacatgtatgtgtctgacaccaatacatgttag |
200 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| || |
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| T |
8653010 |
tctatgaagcagcaatacagatacatatactggatatgacactgacacatagataccaaaggtaa-ctacatgtatgtgtctgacaccaatacatgtcag |
8653108 |
T |
|
| Q |
201 |
acatccgacactgacacataactacatgtgtttgtgtctaacaccattacgtgtcaggcgcacctggcacacgttcaatctagagactaaaagttgttac |
300 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
8653109 |
acacccgacactgacacataactacatgtgtttgtgtctaacaccattacgtgtcaggcgcacctggcacacattcaatctagagactaaaagttgttac |
8653208 |
T |
|
| Q |
301 |
ataggtcataataatcctcaacag---------aaataaaaccaaaacagattgtaaataccaattacctccagttttcatagca---gcagggtcataa |
388 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8653209 |
ataggtcataataatcctcaacagcatcaacagaaataaaaccaaaacagattgtaaataccaattacctccagttttcatagcagcagcagggtcataa |
8653308 |
T |
|
| Q |
389 |
ctctcactattcaaaaactcattaacatcctcgaaacctcgcccataaacagcccatctaggattcctaggcactaccctctcatcaccagacccatcac |
488 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8653309 |
ctctcactattcaaaaactcattaacatcctcgaaacctcgcccataaacagcccatctaggattcctaggcactaccctctcatcaccagacccatcac |
8653408 |
T |
|
| Q |
489 |
tcaacccaccttcttcttcatcatcctctttctcagcaaaaaccttatcaagaactaaaggcttcatctgagccaatttagcttctttataagctttata |
588 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
8653409 |
tcaacccaccttcttcttcatcatcctctttctcagcaaaaaccttatcaagaactaaaggcttcatctgagccaatttagcttctttataagccttata |
8653508 |
T |
|
| Q |
589 |
ctcattcaaatccatatccctcaaaggaatcaaccctcttttcttcttcataactttactattaaactcaatctcttgtgctatcttacgccgttctttc |
688 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8653509 |
ctcattcaaatccatatccctcaaaggaatcaaccctcttttcttcttcataactttactattaaactcaatctcttgtgctatcttacgccgttctttc |
8653608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 219 - 476
Target Start/End: Complemental strand, 9173083 - 9172817
Alignment:
| Q |
219 |
taactacatgtgtttgtgtctaacaccattacgtgtcaggcgcacctggcacacgttcaatctagagactaaaagttgttacataggtcataataatcct |
318 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||||| ||||||| ||| | |||||||||||||||| ||||| |||||||||||| ||||||||| |
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| T |
9173083 |
taactacgtgtgtttgtgtctaacaccattgtgtgtcaggggcacctgacacgccttcaatctagagactagaagttattacataggtcacaataatcct |
9172984 |
T |
|
| Q |
319 |
c---------aacagaaataaaaccaaaacagattgtaaataccaattacctccagttttcatagcagcagggtcataactctcactattcaaaaactca |
409 |
Q |
| |
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| |||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||| ||||||||||| |
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| T |
9172983 |
cgacaacattaacaaaaataaaaccaaaacagattgtaaataccaattacctccaattttcttagcagcaggatcataactctcactgttcaaaaactcc |
9172884 |
T |
|
| Q |
410 |
ttaacatcctcgaaacctcgcccataaacagcccatctaggattcctaggcactaccctctcatcac |
476 |
Q |
| |
|
||||||||||| || ||| ||||||||||||||| ||||||||||||| | ||||||||||||||| |
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| T |
9172883 |
ttaacatcctccaaccctttcccataaacagcccacctaggattcctagcctctaccctctcatcac |
9172817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 9173362 - 9173170
Alignment:
| Q |
1 |
accggatatgacactgacacatagaaaccaaacgtaactacatgtgcttgtgtctgacacaaatacgtgtcaggcaccggaacggcatcctacacaataa |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| || | |||||| |||| ||| ||||||||||| |||||||| |||| ||||||| |
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| T |
9173362 |
accggatatgacattgacacatagaaaccaaacgtaactacatgcgcctatgtctggcacagatatgtgtcaggcacatgaacggcaccctaaacaataa |
9173263 |
T |
|
| Q |
101 |
tctatgaagcagcaatacagatacatataccagatatgacactgacatgtagataccaaaggtaaactaca--tgtatgtgtctgacaccaata |
192 |
Q |
| |
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| ||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||| ||||||| ||||||||||| ||||||||| |
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| T |
9173262 |
tatatgaagcagcaatacagataagtataccggatatgacactgacacgtagataccaaaggt-aactacatgtgtatgtgtctaacaccaata |
9173170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 529 - 686
Target Start/End: Complemental strand, 9172764 - 9172607
Alignment:
| Q |
529 |
aaccttatcaagaactaaaggcttcatctgagccaatttagcttctttataagctttatactcattcaaatccatatccctcaaaggaatcaaccctctt |
628 |
Q |
| |
|
||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||| ||| |||||| ||| |
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|
| T |
9172764 |
aaccttatcaagaaccaaaggcgtcaactgagccaatttagcttctttataagctttatactcgttcgaatcaatatccctcaaatgaaccaacccactt |
9172665 |
T |
|
| Q |
629 |
ttcttcttcataactttactattaaactcaatctcttgtgctatcttacgccgttctt |
686 |
Q |
| |
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||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
9172664 |
ttcttcttcataaaattactattaaactcaaactcttgagctatcttacgccgttctt |
9172607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 9173234 - 9173157
Alignment:
| Q |
1 |
accggatatgacactgacacatagaaaccaaacgtaactacatgtgcttgtgtctgacacaaatacgtgtcaggcacc |
78 |
Q |
| |
|
|||||||||||||||||||| |||| |||||| ||||||||||||| ||||||| |||| |||| ||||||| |||| |
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| T |
9173234 |
accggatatgacactgacacgtagataccaaaggtaactacatgtgtatgtgtctaacaccaatatgtgtcagacacc |
9173157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 97 - 193
Target Start/End: Original strand, 8652878 - 8652975
Alignment:
| Q |
97 |
ataatctatgaagcagcaatacagatacatataccagatatgacactgacatgtagataccaaaggtaaactacatgt--atgtgtctgacaccaatac |
193 |
Q |
| |
|
||||||||||||||||||| | ||| ||||||||| ||||||||||||||| |||| |||||| || |||||||||| |||||||||||| ||||| |
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|
| T |
8652878 |
ataatctatgaagcagcaacaaagacacatataccggatatgacactgacacatagaaaccaaacgt-aactacatgtgcttgtgtctgacacaaatac |
8652975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 642 - 686
Target Start/End: Complemental strand, 9172606 - 9172562
Alignment:
| Q |
642 |
ctttactattaaactcaatctcttgtgctatcttacgccgttctt |
686 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||||||||| |
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|
| T |
9172606 |
ctttactattaaactcaaactcttgagctatcttacgccgttctt |
9172562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 642 - 689
Target Start/End: Complemental strand, 9172561 - 9172514
Alignment:
| Q |
642 |
ctttactattaaactcaatctcttgtgctatcttacgccgttctttct |
689 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| || ||||||||| |
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|
| T |
9172561 |
ctttactattaaactcaatctcttgagctatcttaggctgttctttct |
9172514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 97 - 165
Target Start/End: Complemental strand, 9173394 - 9173326
Alignment:
| Q |
97 |
ataatctatgaagcagcaatacagatacatataccagatatgacactgacatgtagataccaaaggtaa |
165 |
Q |
| |
|
||||||||||||||||||| || || ||||||||| ||||||||| ||||| |||| |||||| |||| |
|
|
| T |
9173394 |
ataatctatgaagcagcaacacggacacatataccggatatgacattgacacatagaaaccaaacgtaa |
9173326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 9173115 - 9173058
Alignment:
| Q |
3 |
cggatatgacactgacacatagaaaccaaacgtaactacatgtgcttgtgtctgacac |
60 |
Q |
| |
|
|||||| ||||| ||| |||||| ||||||||||||||| |||| |||||||| |||| |
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|
| T |
9173115 |
cggatacgacaccgacgcatagataccaaacgtaactacgtgtgtttgtgtctaacac |
9173058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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