View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13186_low_5 (Length: 562)
Name: NF13186_low_5
Description: NF13186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13186_low_5 |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 526; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 12 - 541
Target Start/End: Original strand, 44837888 - 44838417
Alignment:
| Q |
12 |
atgaatctcgcaggtcattgcaacccatcacttccaaattcatgcacaaaattcagctcagaaatcaaagattgccaaagtaaaggaatcaaagttttac |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44837888 |
atgaatctcgcaggtcattgcaacccatcacttccaaattcatgcacaaaattcagctcagaaatcaaagattgccaaagtaaaggaatcaaagttttac |
44837987 |
T |
|
| Q |
112 |
tttcaattggtggcggaattggaagctattctttatcttcaattgaggatgcaagaaacgtttcaaaatttttatggaacactttcttgggtggcaagtc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44837988 |
tttcaattggtggcggaattggaagctattctttatcttcaattgaggatgcaagaaacgtttcaaaatttttatggaacactttcttgggtggcaagtc |
44838087 |
T |
|
| Q |
212 |
atcttcaagaccattaggtgatgctgttttagatggaatagattttgatattgaacttggttccaccgaaaattggcaacaccttgcaggttttcttaaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44838088 |
atcttcaagaccattaggtgatgctgttttagatggaatagattttgatattgaacttggttccaccgaaaattggcaacaccttgcaggttttcttaaa |
44838187 |
T |
|
| Q |
312 |
gggtatagtagatatggaaaaaaggtgtatcttggtgctgctcctcaatgtccaattccagataaatttttgggcactgcacttgaaacaggtctttttg |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44838188 |
gggtatagtagatatggaaaaaaggtgtatcttggtgctgctcctcaatgtccaattccagataaatttttgggcactgcacttgaaacaggtctttttg |
44838287 |
T |
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| Q |
412 |
actttgtttgggtacaattttacaataatcctccttgtcaatataatggaaacataactaaccttgtgaattcatggaataaatggactagtaatgttcc |
511 |
Q |
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| T |
44838288 |
actttgtttgggtacaattttacaataatcctccttgtcaatataatggaaacataactaaccttgtgaattcatggaataaatggaatagtaatgttcc |
44838387 |
T |
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| Q |
512 |
aagagggaagatatttttagggctgccggc |
541 |
Q |
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| T |
44838388 |
aagagggaagatatttttagggctgccggc |
44838417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 132 - 441
Target Start/End: Original strand, 44849095 - 44849392
Alignment:
| Q |
132 |
ggaagctattctttatcttcaattgaggatgcaagaaacgtttcaaaatttttatggaacactttcttgggtggcaagtcatcttcaagaccattaggtg |
231 |
Q |
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||||| || ||||| ||||||||||||||||| |||| | | |||| || |||||||||||||||||||||||||| ||||| |||||||||||| |||| |
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| T |
44849095 |
ggaagatactctttgtcttcaattgaggatgctagaagcttctcaagatatttatggaacactttcttgggtggcacgtcatattcaagaccatttggtg |
44849194 |
T |
|
| Q |
232 |
atgctgttttagatggaatagattttgatattgaacttggttccaccgaaaattggcaacaccttgcaggttttcttaaagggtatagtagatatggaaa |
331 |
Q |
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||||||| |||||||| ||||||||||| |||||| |||||||||| |||||||||||||||||||| | ||||| || | |||| | || |
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| T |
44849195 |
atgctgtgttagatggcatagattttgacattgaaattggttccacaaaaaattggcaacaccttgcacgatttctcaaggattata------acgg--- |
44849285 |
T |
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| Q |
332 |
aaaggtgtatcttggtgctgctcctcaatgtccaattccagataaatttttgggcactgcacttgaaacaggtctttttgactttgtttgggtacaattt |
431 |
Q |
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||| ||||| |||||||||||||||||||| |||| |||| ||| || || | || ||||||||||| |||||||||||||||||||| || || |
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| T |
44849286 |
---ggtttatctaagtgctgctcctcaatgtccatttcctgatagattcttaggaagagcccttgaaacaggactttttgactttgtttgggttcagttc |
44849382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 184 - 266
Target Start/End: Original strand, 44817227 - 44817309
Alignment:
| Q |
184 |
tatggaacactttcttgggtggcaagtcatcttcaagaccattaggtgatgctgttttagatggaatagattttgatattgaa |
266 |
Q |
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||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
44817227 |
tatggaacaatttcttgggtggcacatcatcttcaagaccattaggtgatgctgttttggatggaattgattttgatattgaa |
44817309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 184 - 266
Target Start/End: Original strand, 44834584 - 44834666
Alignment:
| Q |
184 |
tatggaacactttcttgggtggcaagtcatcttcaagaccattaggtgatgctgttttagatggaatagattttgatattgaa |
266 |
Q |
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||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
44834584 |
tatggaacaatttcttgggtggcacgtcatcttcaagacctttaggtgatgctgttttggatggaattgattttgatattgaa |
44834666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 184 - 266
Target Start/End: Complemental strand, 17571077 - 17570995
Alignment:
| Q |
184 |
tatggaacactttcttgggtggcaagtcatcttcaagaccattaggtgatgctgttttagatggaatagattttgatattgaa |
266 |
Q |
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||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
17571077 |
tatggaacaatttcttgggtggcacatcatcttcaagaccattaggtgatgctgttttggatggaattgattttgatattgaa |
17570995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 399 - 452
Target Start/End: Original strand, 47980378 - 47980431
Alignment:
| Q |
399 |
acaggtctttttgactttgtttgggtacaattttacaataatcctccttgtcaa |
452 |
Q |
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| T |
47980378 |
acaggtctttttgactatgtttgggtgcaattttacaacaatccaccttgtcaa |
47980431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 216 - 272
Target Start/End: Complemental strand, 48222567 - 48222511
Alignment:
| Q |
216 |
tcaagaccattaggtgatgctgttttagatggaatagattttgatattgaacttggt |
272 |
Q |
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| T |
48222567 |
tcaagaccattaggtgatgttgtgttggatggtgtagattttgacattgaagttggt |
48222511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 389 - 454
Target Start/End: Complemental strand, 24367551 - 24367486
Alignment:
| Q |
389 |
tgcacttgaaacaggtctttttgactttgtttgggtacaattttacaataatcctccttgtcaata |
454 |
Q |
| |
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||||||| |||||| |||||||| | ||||||||||||||| ||||| || |||||||||||||| |
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| T |
24367551 |
tgcacttacaacaggactttttgattatgtttgggtacaattctacaacaaccctccttgtcaata |
24367486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 405 - 454
Target Start/End: Complemental strand, 24455152 - 24455103
Alignment:
| Q |
405 |
ctttttgactttgtttgggtacaattttacaataatcctccttgtcaata |
454 |
Q |
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| T |
24455152 |
ctttttgattttgtttgggtacaattctacaataacccttcttgtcaata |
24455103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 397 - 454
Target Start/End: Complemental strand, 19135915 - 19135858
Alignment:
| Q |
397 |
aaacaggtctttttgactttgtttgggtacaattttacaataatcctccttgtcaata |
454 |
Q |
| |
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||||||||||||| || | ||||||||| ||||| |||||||| |||||||||||||| |
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| T |
19135915 |
aaacaggtcttttcgattgtgtttgggttcaattctacaataaccctccttgtcaata |
19135858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 454
Target Start/End: Original strand, 148848 - 148913
Alignment:
| Q |
389 |
tgcacttgaaacaggtctttttgactttgtttgggtacaattttacaataatcctccttgtcaata |
454 |
Q |
| |
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||||||| |||||| || ||||| | |||||||||||| || |||||||| |||||||||||||| |
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| T |
148848 |
tgcacttacaacaggcctctttgattatgtttgggtacagttctacaataaccctccttgtcaata |
148913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 198 - 266
Target Start/End: Original strand, 43901273 - 43901341
Alignment:
| Q |
198 |
ttgggtggcaagtcatcttcaagaccattaggtgatgctgttttagatggaatagattttgatattgaa |
266 |
Q |
| |
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|||||||| || ||||||||| | ||||| || |||||| | |||||||| || ||||||||||||||| |
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| T |
43901273 |
ttgggtggaaattcatcttcacgtccatttggcgatgctatattagatggtattgattttgatattgaa |
43901341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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