View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13186_low_7 (Length: 530)
Name: NF13186_low_7
Description: NF13186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13186_low_7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 19 - 530
Target Start/End: Complemental strand, 18649180 - 18648673
Alignment:
| Q |
19 |
gatccgaggcgatttttccaggatcaaaccaattccaaacttccaaaataattcctctgatgaaatttgaaggcacacgcaacaaatgtggnnnnnnnnt |
118 |
Q |
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| T |
18649180 |
gatccgaggcgatttttccaggatcaaaccaattccaaacttccaaaataattcctctgatgaaatttgaaggcacacgcaacaaatgtggaaaaaaaat |
18649081 |
T |
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| Q |
119 |
gttgaaagaatcctaactcatacannnnnnnagacaaggggagtagcattcttaagtttatgtttgctttagaatagaaatagggaatatacacatgttg |
218 |
Q |
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| T |
18649080 |
gttgaaagaatcctaactcatacatttttttagacaaggggagtagcattcttaagtttatgtttgctttagaatagaaatagggaatatacacatgttg |
18648981 |
T |
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| Q |
219 |
atcaacataaaaaagaaaagcaagaaaagtaacaaatttacaagggaatccttcatattcattatactttaagaattaccatgcacatatatagacaaaa |
318 |
Q |
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| T |
18648980 |
atcaacataaaaaagaaaagcaagaaaagtaacaaatttacaagggaatccttcatattcattatactttaagaattaccatgcacatatatagacaaaa |
18648881 |
T |
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| Q |
319 |
acaagnnnnnnnttatttatctcttcattatgtcatccttcttgatagtaaaatcccaaaggtctccatatttttcattgaaatcccatatgctcatgga |
418 |
Q |
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||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18648880 |
acaagaaaaa----aattatctcttcattatgtcatccttcttgatagtaaaatcccaaaggtctccatatttttcattgaaatcccatatgctcatgga |
18648785 |
T |
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| Q |
419 |
attatagtcatttatcaacttgtctctagctcctctttccatgttgtatatttgaggttcaaagtgatgaggttgatcaggtttatccatctcaataatg |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18648784 |
attatagtcatttatcaacttgtctctagctcctctttccatgttgtatatttgaggttcaaagtgatgaggttgatcaggtttatccatctcaataatg |
18648685 |
T |
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| Q |
519 |
caaaatacaatt |
530 |
Q |
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|||||||||||| |
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| T |
18648684 |
caaaatacaatt |
18648673 |
T |
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