View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13186_low_8 (Length: 505)
Name: NF13186_low_8
Description: NF13186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13186_low_8 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 318
Target Start/End: Original strand, 34771460 - 34771760
Alignment:
| Q |
18 |
cttactgttacttccctctctatattgttacttcaacacacacacattcatatgcatattcacattcacactcttctgttttttgcttttgaactcttca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34771460 |
cttactgttacttccctctctatattgttacttcaacacacacacattcatatgcatattcacattcacactcttctgttttttgcttttgaactcttca |
34771559 |
T |
|
| Q |
118 |
acttctaagaaaaatgtctaatatttgggatggttgttacctatttattattttcatcttcaatcaattcttacatttcattgttgatgnnnnnnnngtt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
34771560 |
acttctaagaaaaatgtctaatatttgggatggttgttacctatttattattttcatcttcaatcaattcttacatttcattgttgatgttttttttgtt |
34771659 |
T |
|
| Q |
218 |
ggaatgtgtttagatttcatgatcatgttcatgttcatcatgttcatttcaaccatgctacatgttacattacatctttccaaacttgatagacttttac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34771660 |
ggaatgtgtttagatttcatgatcatgttcatgttcatcatgttcatttcaaccatgctacatgttacattacatctttccaaacttgatagacttttac |
34771759 |
T |
|
| Q |
318 |
c |
318 |
Q |
| |
|
| |
|
|
| T |
34771760 |
c |
34771760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 385 - 495
Target Start/End: Original strand, 34771828 - 34771938
Alignment:
| Q |
385 |
gagaatctgggatggttggttgttatgagttataattttgttaatcttattttgtttcagcttatgaaagggaaagacatgagatgacctgcttgtgcaa |
484 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34771828 |
gagaatctgggatggttggttgttatgagttataattttgttaatcttattttgtttcagcttatgaaagggaaagacatgagatgacctgcttgtgcaa |
34771927 |
T |
|
| Q |
485 |
ttatgatgatg |
495 |
Q |
| |
|
|||| |||||| |
|
|
| T |
34771928 |
ttataatgatg |
34771938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 73 - 150
Target Start/End: Original strand, 34781083 - 34781161
Alignment:
| Q |
73 |
atattcacattcacactcttctgtttt-ttgcttttgaactcttcaacttctaagaaaaatgtctaatatttgggatgg |
150 |
Q |
| |
|
||||||||||| ||| ||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
34781083 |
atattcacatttacattcttctgtttttttgcttttgaactcttcaacttctgataaaaatgtctaatatttgggatgg |
34781161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 87
Target Start/End: Original strand, 34795968 - 34796000
Alignment:
| Q |
55 |
acacacacattcatatgcatattcacattcaca |
87 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
34795968 |
acacacacattcatatgcatattcacattcaca |
34796000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University