View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13187_high_20 (Length: 264)
Name: NF13187_high_20
Description: NF13187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13187_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 21 - 254
Target Start/End: Complemental strand, 27940550 - 27940319
Alignment:
| Q |
21 |
tctaggtctatttgctcagtctcagatatttaccgttctgtgtcagaggtttagtttgagttgttcacttctctactccttgtggttttgtattttcatt |
120 |
Q |
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| T |
27940550 |
tctagatctattcgctcagtctcagatatttaccattctgtgtcagaggtttagtttgcgttgttcacttctg--ctccttgtggttttgtattttcatt |
27940453 |
T |
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| Q |
121 |
ctattgtgtttctagtttttgttgtgttgtcttgaggtacgacgttctccaacttcccttcaaccttcaattggattcagattcaagttatgatttgggt |
220 |
Q |
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||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
27940452 |
ctattatgtttccgatttttgttgtgttgtcttgaggttagacgttctccaacttcccttcaaccttcaattgtattcagattcaagttatgatctgggt |
27940353 |
T |
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| Q |
221 |
tttagtttcgttctctacgttttttagattcatc |
254 |
Q |
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||||||||||||||||| |||||||||||||||| |
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| T |
27940352 |
tttagtttcgttctctatgttttttagattcatc |
27940319 |
T |
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