View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13187_high_3 (Length: 570)
Name: NF13187_high_3
Description: NF13187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13187_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 77 - 552
Target Start/End: Complemental strand, 4477460 - 4476985
Alignment:
| Q |
77 |
atgacttaatgtgttacct-tctggatgcatgtctttcaactatcgacgaaattcagtgaatctcttatcagtctagccattcatcaccgtcagattgta |
175 |
Q |
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|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4477460 |
atgacttaatgtgttaccgatttggatgcatgtctttcaactatcgacgaaattcagtgaatctcttatcagtctagccattcatcaccgtcagattgta |
4477361 |
T |
|
| Q |
176 |
cattcttaactttaccacccccaattattctttaagcgtatccttagaatctacacgtagaaatgtaaactctaagaagatagagtttccttaaagagac |
275 |
Q |
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|| |||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4477360 |
caatcttaactttaccacccc-aattattctttaaacgtatccttagaatctacacatagaaatgtaaactctaagaagatagagtttccttaaagagac |
4477262 |
T |
|
| Q |
276 |
tagagaattagcaattggtgttattcagaatctagacactttgctctttgtaagaattacatttaccttctatgttgtgtgagcgattcgagtcttcgtt |
375 |
Q |
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|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4477261 |
cagagaattagcaattggtgttattcagaacctagacactttgctctttgtaagaattacatttaccttctatgttgtgtgagcgattcgagtcttcgtt |
4477162 |
T |
|
| Q |
376 |
tacacatgatcatcctgttcaccttcacatcagaaacttgagtcatcgctcacaaaatttttgtttcctgttcacaaacgcaagcaaagattcctctcac |
475 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4477161 |
cacacatgatcatcctgttcaccttcacatcagaaacttgagtcatcgctcacaaagtttttgtttcctgttcacaagcgcaagcaaagattcctctcac |
4477062 |
T |
|
| Q |
476 |
gcatgattaacatattttctataattatgagaaattgtactatcgtgcatgcaagacctaattttacacgcacaaaa |
552 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4477061 |
gcatgattaacatattttctataattatgagaaattgtactatcgtgcatgcaagacctaattttaaacgcacaaaa |
4476985 |
T |
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