View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13187_high_4 (Length: 545)
Name: NF13187_high_4
Description: NF13187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13187_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 12 - 526
Target Start/End: Complemental strand, 26520118 - 26519604
Alignment:
| Q |
12 |
atgaaccaaacaaaagtttccagggcctacaaaatattttttgtaaaataaaaattagatagttttactcactcaagtacaccaaaaaccaaattagctt |
111 |
Q |
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| T |
26520118 |
atgaaccaaacaaaagtttccagggcctacaaaatattttttgtaaaataaaaattagatagttttactcactcaagtacaccaaaaaccaaattagctt |
26520019 |
T |
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| Q |
112 |
atgtaaattagcaagagattttcggtgtgacaaacattacctacacggtaagaaaattgaccaagtgcttcaataaaaggcatagactcaatatcccctg |
211 |
Q |
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| T |
26520018 |
atgtaaattagcaagaggttttcggtgtgacaaacattacctacgcggtaagaaaattgaccaagtgcttcaataaaaggcatagactcaatatcccctg |
26519919 |
T |
|
| Q |
212 |
catcaaagaaaaatcattttaattaaacaaaggtttcaaaatactatattactactttctctcactatttaccaaatagaaaccattttaaatttcttta |
311 |
Q |
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| T |
26519918 |
catcaaagaaaaatcattttaattaaacaaaggtttcaaaatactatattactactttctctcactatttaccaaatagaaaccattttaaatttcttta |
26519819 |
T |
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| Q |
312 |
aaatatggaaaaattgaatggatgatggaattataatagtactgcaaatcaagttcaaattctatattgataaaaaagctttttgctaagaatattaact |
411 |
Q |
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| T |
26519818 |
aaatatggaaaaattgaatggatgatggaattatagtagtactgcaaatcaagttcaaattctatatttataaaaaagctttttgctaagaatattaact |
26519719 |
T |
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| Q |
412 |
tacctatagttccacccaattcgatgacacaaacatcggcaggcccttctttaccatcaaccggaatctgtgctacacgctctatccactcttggatggc |
511 |
Q |
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| T |
26519718 |
tacctatagttccacccaattcgatgacacaaacatcggcaggcccttctttaccatcaaccggaatctgtgctacacgctctatccactcttggatggc |
26519619 |
T |
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| Q |
512 |
atctgttatgtgtgg |
526 |
Q |
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| T |
26519618 |
atctgttatgtgtgg |
26519604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 402 - 526
Target Start/End: Complemental strand, 18358316 - 18358192
Alignment:
| Q |
402 |
aatattaacttacctatagttccacccaattcgatgacacaaacatcggcaggcccttctttaccatcaaccggaatctgtgctacacgctctatccact |
501 |
Q |
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|||| ||| ||||||||||||||||||||||| |||||||||||||| ||||| |||||||| ||||||||||| | ||||||||||| |||||||||| |
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| T |
18358316 |
aataataatttacctatagttccacccaattcaatgacacaaacatcagcagggccttcttttccatcaaccggtacttgtgctacacgttctatccact |
18358217 |
T |
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| Q |
502 |
cttggatggcatctgttatgtgtgg |
526 |
Q |
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| T |
18358216 |
cttggatagcatctgtgatgtgtgg |
18358192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 139 - 232
Target Start/End: Complemental strand, 18358737 - 18358644
Alignment:
| Q |
139 |
tgacaaacattacctacacggtaagaaaattgaccaagtgcttcaataaaaggcatagactcaatatcccctgcatcaaagaaaaatcatttta |
232 |
Q |
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| T |
18358737 |
tgacaaacattacctacgcggtacgaaaattggccaagtgcttcaataaagggcatcgactcgatgtcccctacatcaaagtaaaatcatttta |
18358644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 469
Target Start/End: Complemental strand, 29942112 - 29942055
Alignment:
| Q |
412 |
tacctatagttccacccaattcgatgacacaaacatcggcaggcccttctttaccatc |
469 |
Q |
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||||||| |||||||||||||| |||||||| ||||| || || |||||||| ||||| |
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| T |
29942112 |
tacctatggttccacccaattctatgacacatacatcagctggaccttcttttccatc |
29942055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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