View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13187_high_6 (Length: 497)
Name: NF13187_high_6
Description: NF13187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13187_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 408; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 7 - 480
Target Start/End: Original strand, 29406117 - 29406590
Alignment:
| Q |
7 |
tcgaagaatatttgtcgatgatcattgataatttgaatctactatcataannnnnnnnnnnnnnnnnncaatatatatgtaggaatgattttcgagacta |
106 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
29406117 |
tcgaacaatatttgtcgatgatcattgataatttgaatctactatcataattttttctaattttttttcaatatatatgtaggaatgattttcgagacta |
29406216 |
T |
|
| Q |
107 |
tgcagagctttgttataaggaattcggagatagggtgaagcattggatcacattgaacgagccatggacattaagtaaatacggttacgctgatggaagg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29406217 |
tgcagagctttgttataaggaattcggagatagggtgaagcattggatcacattgaacgagccatggacattaagtaaatacggttacgctgatggaagg |
29406316 |
T |
|
| Q |
207 |
tcagcacccggacggtgttcatcctggcacgaccacaattgcattggtggtgattcagccactgaaccctatatagtggctcataatcagttacttgctc |
306 |
Q |
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|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29406317 |
tcagcacccggacgatgttcatcctggcatgaccacaattgcattggtggtgattcagccactgaaccctatatagtggctcataatcagttacttgctc |
29406416 |
T |
|
| Q |
307 |
atgcaactgccgtcaaagtttacaaagctaaatatcaggttttgcttcatatacactctttttcggacgaataacgtaagaatttccataattgattacc |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29406417 |
atgcaactgccgtcaaagtttacaaagctaaatatcaggttttgcttcatatacactctttttcggacgaataacgtaagaatttccataattgattacc |
29406516 |
T |
|
| Q |
407 |
taaaattacttcctttatcactaggcatctcagaagggctccatagggataacactatcatgtgactggatggt |
480 |
Q |
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| T |
29406517 |
taaaattacttcctttatcactaggcatctcagaagggctccatagggataacactatcatgtgactggatggt |
29406590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 87 - 348
Target Start/End: Complemental strand, 29460130 - 29459869
Alignment:
| Q |
87 |
aggaatgattttcgagactatgcagagctttgttataaggaattcggagatagggtgaagcattggatcacattgaacgagccatggacattaagtaaat |
186 |
Q |
| |
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||||||||||||| |||||||| ||||||||||| ||| ||||| ||||||||||| |||||||||||||||||||| || |||||||| || ||| |
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| T |
29460130 |
aggaatgattttcaagactatgtagagctttgttttaaagaatttggagatagggtaaagcattggatcacattgaatgaaccatggacctttgccaaac |
29460031 |
T |
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| Q |
187 |
acggttacgctgatggaaggtcagcacccggacggtgttcatcctggcacgaccacaattgcattggtggtgattcagccactgaaccctatatagtggc |
286 |
Q |
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| T |
29460030 |
atggttatgttgaagggaatctagcacccggacgatgttcatcctggcaaaacctaaattgcactgggggagactctgccactgaaccctatctagtggc |
29459931 |
T |
|
| Q |
287 |
tcataatcagttacttgctcatgcaactgccgtcaaagtttacaaagctaaatatcaggttt |
348 |
Q |
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||| ||||| ||||||||||||||| | || ||||| | |||||| ||||||||||||||| |
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| T |
29459930 |
tcacaatcaattacttgctcatgcatcagctgtcaatatctacaaaactaaatatcaggttt |
29459869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 80 - 346
Target Start/End: Original strand, 29422936 - 29423202
Alignment:
| Q |
80 |
tatatgtaggaatgattttcgagactatgcagagctttgttataaggaattcggagatagggtgaagcattggatcacattgaacgagccatggacatta |
179 |
Q |
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|||||| ||||| ||||||||||||||||| |||||||| | ||| |||||||| || || || || |||||||||||| |||| || |||||| | || |
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| T |
29422936 |
tatatgcaggaaagattttcgagactatgcggagctttgctttaaagaattcggggacagagtaaaacattggatcacactgaatgaaccatgggccttt |
29423035 |
T |
|
| Q |
180 |
agtaaatacggttacgctgatggaaggtcagcacccggacggtgttcatcctggcacgaccacaattgcattggtggtgattcagccactgaaccctata |
279 |
Q |
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||| | | ||| ||||| ||||| | ||||| ||||| |||||| ||||||| || ||||||| ||||| ||||| |||||||||||||||| |
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| T |
29423036 |
gccaaacatgcttatgctgagggaagtttcgcacctggacgatgttcaccctggcaaaacttgaattgcaccggtggagattccgccactgaaccctata |
29423135 |
T |
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| Q |
280 |
tagtggctcataatcagttacttgctcatgcaactgccgtcaaagtttacaaagctaaatatcaggt |
346 |
Q |
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| T |
29423136 |
tagtgtctcataatcaaatacttgctcatgcatctgctgtcaatgcctacaaaactaagtatcaggt |
29423202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 81 - 154
Target Start/End: Complemental strand, 25038825 - 25038752
Alignment:
| Q |
81 |
atatgtaggaatgattttcgagactatgcagagctttgttataaggaattcggagatagggtgaagcattggat |
154 |
Q |
| |
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||||| || |||||||||| ||||||||||||||| || | ||||||||||||||||| |||||||||||||| |
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| T |
25038825 |
atatgcagaaatgattttcaagactatgcagagctatgcttcaaggaattcggagatagagtgaagcattggat |
25038752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 174
Target Start/End: Complemental strand, 25160246 - 25160165
Alignment:
| Q |
93 |
gattttcgagactatgcagagctttgttataaggaattcggagatagggtgaagcattggatcacattgaacgagccatgga |
174 |
Q |
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||||||| ||||||||| || ||||||| |||||||| || ||||| || ||| ||||| | || |||||||||||||||| |
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| T |
25160246 |
gattttcaagactatgcggaactttgtttcaaggaatttggtgatagagtcaagtattgggttactttgaacgagccatgga |
25160165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 102 - 174
Target Start/End: Complemental strand, 24986384 - 24986312
Alignment:
| Q |
102 |
gactatgcagagctttgttataaggaattcggagatagggtgaagcattggatcacattgaacgagccatgga |
174 |
Q |
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| T |
24986384 |
gactatgctgaactttgctacaaggaatttggtgatagggtgaaacattggattactttgaatgaaccatgga |
24986312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 25189423 - 25189367
Alignment:
| Q |
90 |
aatgattttcgagactatgcagagctttgttataaggaattcggagatagggtgaag |
146 |
Q |
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| T |
25189423 |
aatgattttcgagactatgctgatctttgcttcaaggaatttggagatagagtgaag |
25189367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 171
Target Start/End: Complemental strand, 42167291 - 42167210
Alignment:
| Q |
90 |
aatgattttcgagactatgcagagctttgttataaggaattcggagatagggtgaagcattggatcacattgaacgagccat |
171 |
Q |
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| T |
42167291 |
aatgattttcaagactatgcggaactttgtttcaaagagtttggagatagggtgaagtattggattactttcaatgagccat |
42167210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 171
Target Start/End: Original strand, 42290575 - 42290656
Alignment:
| Q |
90 |
aatgattttcgagactatgcagagctttgttataaggaattcggagatagggtgaagcattggatcacattgaacgagccat |
171 |
Q |
| |
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|||||||||| |||||| || || ||||||| || || || ||||||||||||||| |||||||||| || || ||||||| |
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| T |
42290575 |
aatgattttcaagactacgcggaactttgtttcaaagagtttggagatagggtgaagtattggatcactttcaatgagccat |
42290656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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