View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13187_low_1 (Length: 657)
Name: NF13187_low_1
Description: NF13187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13187_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 599; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 8 - 643
Target Start/End: Original strand, 43489124 - 43489761
Alignment:
| Q |
8 |
tgagatgaattaggttttggtggtttggagcatacaatgttgttggtcctagagattgagctaggtaatgaatctccatgaggtgccataatagttgtat |
107 |
Q |
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| T |
43489124 |
tgagatgaattaggttttggtggtttggagcatacaatgttgttgctcctagagattgagctaggtaatgaatctccatgaggtgccataatagttgtat |
43489223 |
T |
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| Q |
108 |
ttgttagtaaga--atatgataaatgtgttatgaatattgaagaaactagctaggaggaacaatcttatttataatagttgtgttttgctactaagaatg |
205 |
Q |
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| T |
43489224 |
ttgttagtaagagaatatgataaatgtgttatgaatattgaagaaactagctaggaggaacaatcttatttataatagttgtgttttgctactaagaatg |
43489323 |
T |
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| Q |
206 |
tgagatgtgtggatgttagaaatgcaaatgtcagttttcaatgatcgtgaacttaattgctagatttttcaagaagatttatgaggtgaatgtgatgtat |
305 |
Q |
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| T |
43489324 |
tgagatgtgtggatgttagaaatgcaaatgtcagttttcaatgatcgtgaacttaattgctagatttttcaagaagatttatgaggtgaatgtgatgtat |
43489423 |
T |
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| Q |
306 |
cgtatagcttttagtgatatgtagttgtgtacatacttttaaatttcccatatgtcaatgctttactaccaagtgaacttccacgttggtagttgtgacc |
405 |
Q |
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| T |
43489424 |
cgtataacttttagtgatatgtagttgtgtacatacttttaaatttcccatatgtcaatgcttcactaccaagtgaacttccacgttggtagttgtgacc |
43489523 |
T |
|
| Q |
406 |
tcaagaataaggtgatcaatgcatatgatttcattctatggctgataatttagttgaaaggcaaccacatacatgcgtgtggagagtttcatgtttcata |
505 |
Q |
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| T |
43489524 |
tcaagaataaggtgatcaatgtatatgatttcattctatggctgataatttagttgaaaggcaaccacatacatgcgtgtggagagtttcatgtttcata |
43489623 |
T |
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| Q |
506 |
gttatatggtctaagccctaaggtcatgtttgaacaacaccttaattaagtgtctatataattgcttgtgtataaataatttctagttcaaaatataaaa |
605 |
Q |
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| T |
43489624 |
gatatatggtctaagccctaaggtcatgtttgaataacaccttaattaagtgtctatataattgcttgtgtataaataatttctagttcaaaatataaaa |
43489723 |
T |
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| Q |
606 |
taaagtcaaatttgtttgtataaattataagttgtttt |
643 |
Q |
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| T |
43489724 |
taaagtcaaatttgtttgtataaattataagctgtttt |
43489761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 561 - 615
Target Start/End: Complemental strand, 54325178 - 54325124
Alignment:
| Q |
561 |
atataattgcttgtgtataaataatttctagttcaaaatataaaataaagtcaaa |
615 |
Q |
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| T |
54325178 |
atataagtgcttgtgtataaactatttctattacaaaagataaaataaagtcaaa |
54325124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 576 - 636
Target Start/End: Original strand, 6981436 - 6981497
Alignment:
| Q |
576 |
tataaataatttctagttcaaaatataaaataaagtcaaatttgtttg-tataaattataag |
636 |
Q |
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| T |
6981436 |
tataaattatttctataacaaaaaataaaacaaagtcaaatttgtttgatataaattataag |
6981497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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