View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13187_low_11 (Length: 432)
Name: NF13187_low_11
Description: NF13187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13187_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Original strand, 21839882 - 21840310
Alignment:
| Q |
1 |
atgtttataagagcatccttggccaccattcttgttagtccattcttagaaacaacacaaagtgataataaattaggcaaagatgagtggtgaaaggata |
100 |
Q |
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||||||||||||| | | ||||||||||| | || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21839882 |
atgtttataagagaaccgttggccaccatcttggtaagaccattcttagaaacaacacaaagtgataataaattaggcaaagatgagtggtgaaaggata |
21839981 |
T |
|
| Q |
101 |
atcaacagtgagattcatgtagttatgtttcccttccttgcattcggtcacattagtccatttgtgcaattatccaacaagttattctctcatggaattc |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21839982 |
atcaacagtgagattcatgtagctatgtttcccttcctagcatttggtcacattagtccatttgtgcaattatccaacaagttattctctcatggaattc |
21840081 |
T |
|
| Q |
201 |
acatctcattcttgtcaccttcagctaacattccaaaaatcaaatcaactttcaatctcaacccttcaatccatatcattccccttcacgtctcagataa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21840082 |
acatctcattcttgtcaccttcagctaacattccaaaaatcaaatcaactttcaatctcaacccttcaatccatatcattccccttcacgtctcagataa |
21840181 |
T |
|
| Q |
301 |
cttaccaagtaacacttctaatttgcactcagacatgtttggcacactcattcaagcaatagactcaatgcaagatcatgtaaaaaccattttgtttgaa |
400 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21840182 |
cttaccaagtaacacttctaatttgcactcaggcatgtttggcacactcattcaagcaatagactcaatgcaagatcatgtaaaaaccattttgtttgaa |
21840281 |
T |
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| Q |
401 |
cttaaacctaattttattttcttcgacat |
429 |
Q |
| |
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||||||||||||||||||||||| ||||| |
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| T |
21840282 |
cttaaacctaattttattttctttgacat |
21840310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 125 - 288
Target Start/End: Original strand, 40440271 - 40440434
Alignment:
| Q |
125 |
atgtttcccttccttgcattcggtcacattagtccatttgtgcaattatccaacaagttattctctcatggaattcacatctcattcttgtcaccttcag |
224 |
Q |
| |
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|||||||| ||||||||||| ||||| || ||||| ||||| ||||||||||||||| |||| ||||| ||| ||||||| | ||||| ||| ||||| |
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| T |
40440271 |
atgtttccattccttgcatttggtcatataagtccttttgttcaattatccaacaagctattttctcaaggagttcacataactttcttatcagcttcat |
40440370 |
T |
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| Q |
225 |
ctaacattccaaaaatcaaatcaactttcaatctcaacccttcaatccatatcattccccttca |
288 |
Q |
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| ||||||| ||||||||||| ||| | ||||||||||| || ||||| || ||||| ||||| |
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| T |
40440371 |
ccaacattcacaaaatcaaatccactcttaatctcaacccatccatccaaattattccacttca |
40440434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 125 - 262
Target Start/End: Original strand, 40443294 - 40443431
Alignment:
| Q |
125 |
atgtttcccttccttgcattcggtcacattagtccatttgtgcaattatccaacaagttattctctcatggaattcacatctcattcttgtcaccttcag |
224 |
Q |
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|||||||| ||||||| ||| |||||||||||||| ||||| |||||||| ||||| ||||||||||||||| ||| | | | ||||| ||| ||||| |
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| T |
40443294 |
atgtttccattccttgtatttggtcacattagtccttttgttcaattatcaaacaaattattctctcatggagttcgcgtaactttcttatcagcttcat |
40443393 |
T |
|
| Q |
225 |
ctaacattccaaaaatcaaatcaactttcaatctcaac |
262 |
Q |
| |
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| |||||||| | ||||||| || |||| ||||||||| |
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| T |
40443394 |
caaacattcctagaatcaaaacagcttttaatctcaac |
40443431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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