View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13187_low_13 (Length: 391)
Name: NF13187_low_13
Description: NF13187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13187_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 8522208 - 8521834
Alignment:
| Q |
1 |
tggtctcaggtctgtttataagtgcacgccacatgttgtgttatataataaaattccaagttcatgtatatgttagtgtataaaatataattcaaattta |
100 |
Q |
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| T |
8522208 |
tggtctcaggtctgtttataagtgcatgccacaagttgtgttatataataaaattccaagttcatgtatatgttagtgtataaaatataattcaaattta |
8522109 |
T |
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| Q |
101 |
tacgacccttttacctttgttattctgttttggcttatttggtgcatagttggtacaaaattgtgttttacaaaaggtatccaatccaataaatacaaac |
200 |
Q |
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| T |
8522108 |
tatgacctttttaactttgttattctgttttggcttatttggtgcataattggtacaaaattgtgttttacaaaaggtatccaatccaataaatacaaac |
8522009 |
T |
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| Q |
201 |
tcttgttctttttaaacacattctttagaaagcaataaaaaatagacatgataagtgtgatatttacatgattagttagctaaagaaatctattcagaag |
300 |
Q |
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| T |
8522008 |
tcttgttctttttaaacacattctttagaaaacaataaaaaatagacatgataagtgtgatatttacatgattagttagctaaagaaatctatttagaag |
8521909 |
T |
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| Q |
301 |
tgtgctgggaatttggtatggacacaacgaggagatcatttacagattttacaagaaattttacaattttataag |
375 |
Q |
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| T |
8521908 |
tgtgctgggaatttggtatggacataacgaggcgatcatttacagattttacaagaaattttacaattttataag |
8521834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 87 - 178
Target Start/End: Complemental strand, 42116084 - 42115994
Alignment:
| Q |
87 |
ataattcaaatttatacgacccttttacctttgttattctgttttggcttatttggtgcatagttggtacaaaattgtgttttacaaaaggt |
178 |
Q |
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| T |
42116084 |
ataattcacatttatatgacccttttacctttgcaattctgttttggctttttttgtttgta-ttgttacagaattgtgttttagaaaaggt |
42115994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 42116854 - 42116793
Alignment:
| Q |
13 |
tgtttataagtgcacgccacatgttgtgttatataataaaattccaagttcatgtatatgtt |
74 |
Q |
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| T |
42116854 |
tgtttacatgtgcatgccacaagatgtgttatataataaaattccaagtttatatatatgtt |
42116793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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