View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13187_low_15 (Length: 372)
Name: NF13187_low_15
Description: NF13187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13187_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 45304316 - 45303971
Alignment:
| Q |
1 |
gagagagagattagataactagtaaaaagtagtaacttatatgcagtaatgcacaaagtaactaggtataggggaaagtaagaaaggaccatagtatagt |
100 |
Q |
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| T |
45304316 |
gagagagagattagataactagtaaaaagtagtaacttatatgcagcaatgcacaaagtaactaggtataggggaaagtaagaaaggaccat-----agt |
45304222 |
T |
|
| Q |
101 |
aggtaagaaaagaaaagaaaaggtttcgttgtagtagtaatttgttgggaaatgaaaagggtcctaaaagctgcattacttcctttctgtcggggctgct |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
45304221 |
aggt-----aagaaaagaaaaggtttcgttgtagtagtaatttgttgggaaatgaaaagggtcctaaaagctgcattccttcctttctgtcggggctgct |
45304127 |
T |
|
| Q |
201 |
gttatgaaacttagctgggcttttggggcttgtgcatattcattcaagtcaagtcagtagcttttgggcactcccccattccattattcttctttctatg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45304126 |
gttatgaaacttagctgggcttttggggcttgtgcatattcattcaagtcaagtcagtagcttttgggcactcccccattccattattcttctttct--- |
45304030 |
T |
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| Q |
301 |
aaatgaaatgaaattgagagaccaccaaaacaaacaagacaaccctcaccttcacacctttgctt |
365 |
Q |
| |
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||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
45304029 |
--atgaaatgaaatttagagaccacca----aaacaagacaaccctcaccttcacacctttgctt |
45303971 |
T |
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