View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13187_low_17 (Length: 341)
Name: NF13187_low_17
Description: NF13187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13187_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 19 - 331
Target Start/End: Original strand, 37696807 - 37697119
Alignment:
| Q |
19 |
gtgtatactcaccggggaacctcgatggcaaaggggagttgaatcttagagagaatgactgtagtggttatacttcggtcgtgtcacttggtgataaccc |
118 |
Q |
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| T |
37696807 |
gtgtatactcaccggggaacctcgatggcaaaggggagttgaatcttagagagaatgactgtagtggttatacttcggtcgtgtcacttggtgataaccc |
37696906 |
T |
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| Q |
119 |
tactgatcctactcattgggtttatggagtggcattgaaatatacacatggtgtttttgatgacattgtgaccactgagtgtactagttgtgagagtagt |
218 |
Q |
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| T |
37696907 |
tactgatcctactcattgggtttatggagtggcattgaaatatacacatggtgtttttgatgacattgtgaccactaagtgtactagttgtgagagtagt |
37697006 |
T |
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| Q |
219 |
ggtggtgtgtgtggatatgctcctccaggaagtggatttgtttgtgtttgtaaaagtggatataatactagccttgattgctctaattacgatcaaaacc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37697007 |
ggtggtgtgtgtggatatgctcctccaggaagtggatttgtttgtgtttgtaaaagtggatataatactagccttgattgctctaattacgatcaaaacc |
37697106 |
T |
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| Q |
319 |
aggatttcctttg |
331 |
Q |
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| T |
37697107 |
aggatttcctttg |
37697119 |
T |
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