View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13187_low_18 (Length: 340)
Name: NF13187_low_18
Description: NF13187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13187_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 55396511 - 55396187
Alignment:
| Q |
1 |
tagtagcacgagggacttgtctaggaagttttccaagaaagataggtt-gaattgaagcataccagcaatggtgaggagaacagtagggtcatctggaac |
99 |
Q |
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| T |
55396511 |
tagtagcacgagggacttgtctaggaagttttccaagaaagataggtttgaattgaagcataccagcaatggtgaggagaacagtagggtcatctggaac |
55396412 |
T |
|
| Q |
100 |
gagagaagcactgggaaggaccttgtgaccacgggaagcataaaaactaagaaatctttcccgtatggaatctccactcacacaattactatcattgtct |
199 |
Q |
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| T |
55396411 |
gagagaagcactgggaaggaccttgtgaccacgggaagcataaaaactaagaaatctttcccgtatggaatctccactcacacaattactatcattgtct |
55396312 |
T |
|
| Q |
200 |
tgcgagttcggtgatgacaacgacgatgatgtacagaaggaaagaagaagacgacgacgtagatgtagttgtttgaaagagataaatcctcctcctgctg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
55396311 |
tgcgagttcggtgatgacaacgacgatgatgtacagaagggaagaagaagacgacgacgtagatgtagttgtttgaaagagataaatcctcctgctgctg |
55396212 |
T |
|
| Q |
300 |
ctgctgctaatgtaacattcatatt |
324 |
Q |
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||||||||||||||||||||||||| |
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| T |
55396211 |
ctgctgctaatgtaacattcatatt |
55396187 |
T |
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