View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13187_low_2 (Length: 640)
Name: NF13187_low_2
Description: NF13187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13187_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 16 - 499
Target Start/End: Original strand, 24052615 - 24053098
Alignment:
| Q |
16 |
cactatgtagtaaaatggtaaggataacctacttttgtggtatgagtcttttaattgaatcggttgggtccacttttgaatactcttcctgtcattttaa |
115 |
Q |
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| T |
24052615 |
cactatgtagtaaaatggtaaggataacctacttttgtggtatgagtcttttaattgaataagttgggtccacttttgaatactcttcctatcattttaa |
24052714 |
T |
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| Q |
116 |
cagtttagtaagaaaacagtaaatataaagtattgatacagattatttgtctaaaatgaagaatgtacaatttcaattgtacaaaaagtatataagtact |
215 |
Q |
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| T |
24052715 |
cagtttagtaagaaaacagtaaatataaagtattgatacagatgatttgtctaaaatgaacaatgtacaatttcaatagtacaaaaagtatataagtact |
24052814 |
T |
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| Q |
216 |
aaaattactgtaactgtttaaaacattannnnnnngaatgatttaaacaattccatgtatatggttggtagtagaagaagaaaaattgaacggagaggag |
315 |
Q |
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| T |
24052815 |
aaaattactgtaactgtttaaaacattatttttttgaatgatttaaacaattccatgtatatggttggtagtagaagaagaaaaattgaacggagaggag |
24052914 |
T |
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| Q |
316 |
aagtggaagtgctcacttgcaattgagtaaattttttgttgatgttcaaataaaaggtttcctcagccatcatatcaaaatacctgaaagatgtatcgat |
415 |
Q |
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| T |
24052915 |
aagtggaagtactcacttgcaattgagtaaattttttattgatgttcaaataaaaggtttccttagccatcagatcaaagtacctgaaagatgtatcaat |
24053014 |
T |
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| Q |
416 |
cctatgttaatttcaagaaaatagtgaaattgaaagtgattataaaaacttgattggaaaaaggagatatatatttcttcctca |
499 |
Q |
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| T |
24053015 |
cctatgttaatttcaagaaaatagtgaaattgaaagtgattataaaaacttgattgaaaaaaggagatatatatttctttctca |
24053098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 550 - 631
Target Start/End: Original strand, 24053100 - 24053182
Alignment:
| Q |
550 |
ttgatcgatgtggatgttc---atttgttgtagtgcgcctctctctcttgttatctttcttgttatgttctgactattttcatct |
631 |
Q |
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| T |
24053100 |
ttgatcgatgtggatgttctttatttgttgtagtgagcctctctctc--gttatctttcttgttatgttctggctattttcatct |
24053182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 117; Significance: 3e-59; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 430 - 631
Target Start/End: Complemental strand, 14367934 - 14367733
Alignment:
| Q |
430 |
aagaaaatagtgaaattgaaagtgattataaaaacttgattggaaaaaggagatatatatttcttcctcagatgctttgtctcaaagttgtttgtcatca |
529 |
Q |
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| T |
14367934 |
aagaaaatagtgaaattgaaagtgatcataaaaacttgattgaaaaaaggagatatatagttcttcctcacttgctttgtctcaaagttgtttgtcatca |
14367835 |
T |
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| Q |
530 |
aatgtgcataaagggaacaattgatcgatgtggatgttcatttgttgtagtgcgcctctctc-tcttgt-tatctttcttgttatgttctgactattttc |
627 |
Q |
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| T |
14367834 |
aatgtgcaaaaagggaacaattgatcaatgtggatgttctttatttgt--tgcacctctctcttgttatgtatctttctttttatgttccgactattttc |
14367737 |
T |
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| Q |
628 |
atct |
631 |
Q |
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|||| |
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| T |
14367736 |
atct |
14367733 |
T |
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