View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13187_low_20 (Length: 311)

Name: NF13187_low_20
Description: NF13187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13187_low_20
NF13187_low_20
[»] chr5 (3 HSPs)
chr5 (13-193)||(38734797-38734971)
chr5 (252-292)||(12832874-12832914)
chr5 (252-292)||(12864852-12864892)
[»] chr4 (2 HSPs)
chr4 (191-292)||(22196085-22196186)
chr4 (252-292)||(20509098-20509138)
[»] chr7 (2 HSPs)
chr7 (191-292)||(7288319-7288420)
chr7 (199-290)||(44232367-44232459)
[»] chr6 (2 HSPs)
chr6 (191-291)||(12334691-12334791)
chr6 (249-289)||(24637896-24637936)
[»] chr1 (1 HSPs)
chr1 (144-193)||(9709649-9709698)
[»] chr3 (1 HSPs)
chr3 (249-289)||(35502631-35502671)


Alignment Details
Target: chr5 (Bit Score: 116; Significance: 5e-59; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 13 - 193
Target Start/End: Complemental strand, 38734971 - 38734797
Alignment:
Q  13 aatattgtgatttttatatctttctttacattttataaaaattttgggacctccatttcaaagacttgagtccatcttacatttatatgtctttaannnn 112  Q
    ||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||        
T  38734971 aatattgtgatttttatatctttctgtacattttataaaaaaattgggacctccatttcaaagacttgagtctatcttacatttatatgtctttaa---- 38734876  T
Q  113 nnnnnnnnatggtattctctaaacatttaaatcaaattatcaaatagcacattcgtttatattttgtgtttaccaatttgt 193  Q
            ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  38734875 --ttttttatggtattctctaaacatttaaatcaaattatcaaatggcacattcgtttatattttgagtttaccaatttgt 38734797  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 292
Target Start/End: Complemental strand, 12832914 - 12832874
Alignment:
Q  252 ccttttgtgtatttggggctgcctgttggtggggatgctcg 292  Q
    |||||||||||||||||||||||| |||||||  |||||||    
T  12832914 ccttttgtgtatttggggctgcctattggtggtaatgctcg 12832874  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 292
Target Start/End: Complemental strand, 12864892 - 12864852
Alignment:
Q  252 ccttttgtgtatttggggctgcctgttggtggggatgctcg 292  Q
    |||||||||||||||||||||||| |||||||  |||||||    
T  12864892 ccttttgtgtatttggggctgcctattggtggtaatgctcg 12864852  T

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Target: chr4 (Bit Score: 94; Significance: 7e-46; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 191 - 292
Target Start/End: Original strand, 22196085 - 22196186
Alignment:
Q  191 tgtaccagactcgtggttaacggaggctgccatggttatgaattgtcatgtgggcacgctcccttttgtgtatttggggctgcctgttggtggggatgct 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  22196085 tgtaccagactcgtggttaacggaggctgccatggttatgaattgtcgtgtgggcacgttcccttttgtgtatttggggctgcctgttggtggggatgct 22196184  T
Q  291 cg 292  Q
    ||    
T  22196185 cg 22196186  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 292
Target Start/End: Original strand, 20509098 - 20509138
Alignment:
Q  252 ccttttgtgtatttggggctgcctgttggtggggatgctcg 292  Q
    |||||||||||||||||||||||| |||||||  |||||||    
T  20509098 ccttttgtgtatttggggctgcctattggtggtaatgctcg 20509138  T

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Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 191 - 292
Target Start/End: Complemental strand, 7288420 - 7288319
Alignment:
Q  191 tgtaccagactcgtggttaacggaggctgccatggttatgaattgtcatgtgggcacgctcccttttgtgtatttggggctgcctgttggtggggatgct 290  Q
    |||||||||||||||||||||  ||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  7288420 tgtaccagactcgtggttaacaaaggctgccatggttatgaattttcatgtgggtacgttcccttttgtgtatttggggctgcctgttggtggggatgct 7288321  T
Q  291 cg 292  Q
    ||    
T  7288320 cg 7288319  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 199 - 290
Target Start/End: Original strand, 44232367 - 44232459
Alignment:
Q  199 actcgtggttaacggaggctgccatggttatgaattgtcatgtgggcacgctcccttttgtgtatttgggg-ctgcctgttggtggggatgct 290  Q
    |||||||| |||| |||||||||||||| ||||||||||  ||||||||||| |||||||| ||||||||| |||||||||||||||||||||    
T  44232367 actcgtggctaacagaggctgccatggtaatgaattgtcgagtgggcacgctgccttttgtttatttggggactgcctgttggtggggatgct 44232459  T

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Target: chr6 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 191 - 291
Target Start/End: Original strand, 12334691 - 12334791
Alignment:
Q  191 tgtaccagactcgtggttaacggaggctgccatggttatgaattgtcatgtgggcacgctcccttttgtgtatttggggctgcctgttggtggggatgct 290  Q
    |||| |||||| ||||||||| |||||||||||||| ||||||||||  ||||||||| | |||||||||||||| ||||||| |||||||| |||||||    
T  12334691 tgtaacagacttgtggttaacagaggctgccatggtaatgaattgtcgagtgggcacgttgccttttgtgtatttagggctgcttgttggtgcggatgct 12334790  T
Q  291 c 291  Q
    |    
T  12334791 c 12334791  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 289
Target Start/End: Original strand, 24637896 - 24637936
Alignment:
Q  249 ctcccttttgtgtatttggggctgcctgttggtggggatgc 289  Q
    ||||||||||||||||||||||||||| | ||||| |||||    
T  24637896 ctcccttttgtgtatttggggctgcctataggtggtgatgc 24637936  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 9709698 - 9709649
Alignment:
Q  144 tcaaattatcaaatagcacattcgtttatattttgtgtttaccaatttgt 193  Q
    |||||| |||||||| ||||||  |||||||||||||||||||| |||||    
T  9709698 tcaaatgatcaaatatcacatttctttatattttgtgtttaccactttgt 9709649  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 289
Target Start/End: Original strand, 35502631 - 35502671
Alignment:
Q  249 ctcccttttgtgtatttggggctgcctgttggtggggatgc 289  Q
    |||||||||||||| ||||||||||| |||||||| |||||    
T  35502631 ctcccttttgtgtacttggggctgcccgttggtggtgatgc 35502671  T

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