View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13187_low_21 (Length: 293)
Name: NF13187_low_21
Description: NF13187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13187_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 7 - 275
Target Start/End: Complemental strand, 6069300 - 6069032
Alignment:
| Q |
7 |
gtggttctttcgcgagctggtggagatggaacgaagaagggtgaagctagaataaagtgtcaatgcaacttgggagaacaaggtataaaggttagctggc |
106 |
Q |
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| T |
6069300 |
gtggttctttctccagctggtggagatggaacgaagaagggtgaagctagaataaaatgtcaatgcaacttgggagaacaaggtataaaggttagcttgc |
6069201 |
T |
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| Q |
107 |
taaatactgattgcacagaactgaactcggatcatgtttatgtgtggtatgatccattccattgtgacagcattctcaaatttgataaacctgagatttg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6069200 |
taaatactgattgcacagaactgaactcggatcatgtttatgtgtggtatgatccattccattgtgacagcattctcaaatttgataaacctgagatttg |
6069101 |
T |
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| Q |
207 |
ttttgagttctgtgttacaaacgatatgggggaagttgatggttcaattggtattaaagagtgcggggt |
275 |
Q |
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| T |
6069100 |
ttttgagttctgtgttacaaacgatatgggggaagttgacggttcaattggtattaaagagtgcggggt |
6069032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 7 - 275
Target Start/End: Complemental strand, 6193686 - 6193415
Alignment:
| Q |
7 |
gtggttctttcgcgagctggtggagatggaacgaagaagggtgaagctagaataaagtgtcaatgcaacttgggagaacaaggtataaaggttagctggc |
106 |
Q |
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| T |
6193686 |
gtggttctttctccagcaggtggaaatggaatgaagggtggaggagctaggataaagtgtcaatgcaacttgggagaagaaggtataaaagctacctggc |
6193587 |
T |
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| Q |
107 |
taaatactgattgcacagaactgaactcggatcatgtttatgtgtggtatgatccattccattgtgacagcattctcaaatttgataaacctgagatttg |
206 |
Q |
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| T |
6193586 |
taaatactgatgtcacagaactgaactcggatcatgtttatgtgtggtatgatccattccattgtgacagtattctcaaattttatcaacccgagatttg |
6193487 |
T |
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| Q |
207 |
ttttgagttctgtgttacaaacgata-tgg--gggaagttgatggttcaattggtattaaagagtgcggggt |
275 |
Q |
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||| ||||||| |||||||||||||| ||| ||||||||||||||||| |||||||||||||||| ||||| |
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| T |
6193486 |
tttcgagttctatgttacaaacgatactggccgggaagttgatggttcagttggtattaaagagtgtggggt |
6193415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 184
Target Start/End: Complemental strand, 6176413 - 6176364
Alignment:
| Q |
135 |
ggatcatgtttatgtgtggtatgatccattccattgtgacagcattctca |
184 |
Q |
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| T |
6176413 |
ggatcatgtttttgtatggtatgatccataccattatgacagcatactca |
6176364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 7 - 275
Target Start/End: Original strand, 37453288 - 37453559
Alignment:
| Q |
7 |
gtggttctttcgcgagctggtggagatggaacgaagaagggtgaagctagaataaagtgtcaatgcaacttgggagaacaaggtataaaggttagctggc |
106 |
Q |
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||||||||||| | ||| |||||| |||||| |||||||||||||||| |||||||||||||||||| ||||||| || |||||||||||| | ||||| |
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| T |
37453288 |
gtggttctttctccagcaggtggaaatggaatgaagaagggtgaagctcgaataaagtgtcaatgcagcttgggaaaagaaggtataaaggcttcctggc |
37453387 |
T |
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| Q |
107 |
taaatactgattgcacagaactgaactcggatcatgtttatgtgtggtatgatccattccattgtgacagcattctcaaatttgataaacctgagatttg |
206 |
Q |
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|||||||| || ||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||| | ||||| |
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| T |
37453388 |
taaatactcatgtcacagaactaaactcagatcatacttatgtgtggtatgatccattccattgtgacagcattctcaaattttatcaacctaaaatttg |
37453487 |
T |
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| Q |
207 |
ttttgagttctgtgttacaaacga---tatgggggaagttgatggttcaattggtattaaagagtgcggggt |
275 |
Q |
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||||||||||| |||||||||||| || |||||||||||| |||||||| |||||||||||| ||||| |
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| T |
37453488 |
ttttgagttctatgttacaaacgatactactggggaagttgatagttcaattcatattaaagagtgtggggt |
37453559 |
T |
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