View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13187_low_23 (Length: 287)
Name: NF13187_low_23
Description: NF13187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13187_low_23 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 151; Significance: 6e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 19 - 173
Target Start/End: Original strand, 457123 - 457277
Alignment:
| Q |
19 |
atcatttatcaaggagatcgattgggtggattcggtctagagataggtaaataaaacaaaactgaactcatgaaaatagcttatgaccatgccataagcc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
457123 |
atcatttatcaaggagatcgattgggtggattcggtctagagataggtaaataaaacaaaactgaactcatgaaaatagcttatgaccatgccataagcc |
457222 |
T |
|
| Q |
119 |
attttcacaacttctctatactagtatctcaaacgtttatgttaatgcgaaagtt |
173 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
457223 |
attttcacaacgtctctatactagtatctcaaacgtttatgttaatgcgaaagtt |
457277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 232 - 276
Target Start/End: Original strand, 457336 - 457380
Alignment:
| Q |
232 |
tgttaagaaagaaacacaatttgatttgatataaccttaccctat |
276 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
457336 |
tgttaaaaaagaaacacaatttgatttgatataaccttaccctat |
457380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University